Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i24r
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      130   4e-31
08_02_1181 - 24985963-24986242,24987109-24987197                      126   5e-30
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    109   1e-24
05_07_0169 + 28126467-28127001,28127105-28127286                       28   3.4  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   5.9  
03_02_0178 + 6195402-6199158,6199438-6200003                           27   7.8  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  130 bits (314), Expect = 4e-31
 Identities = 64/116 (55%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
 Frame = -1

Query: 342 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 163
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 162 LNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKGCRQKM 1
           LNK +WS G+R+VP          RND+ED+  +L++LVT   VP   +KG   K+
Sbjct: 64  LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKL 119


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  126 bits (305), Expect = 5e-30
 Identities = 64/115 (55%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
 Frame = -1

Query: 336 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 160
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62

Query: 159 NKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKGCRQKM 1
           NK +WS G+R+VP          RND+ED+  +L++LVT   VP   +KG   K+
Sbjct: 63  NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKV 117


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  109 bits (261), Expect = 1e-24
 Identities = 59/122 (48%), Positives = 77/122 (63%), Gaps = 18/122 (14%)
 Frame = -1

Query: 312 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 181
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72

Query: 180 IRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKGCRQ 7
           IR+D +LNK +W+ G+R+VP          RND+ED+  +L++LVT   +P   +KG   
Sbjct: 73  IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGT 132

Query: 6   KM 1
           K+
Sbjct: 133 KV 134


>05_07_0169 + 28126467-28127001,28127105-28127286
          Length = 238

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 269 RLCKLTVYSRVTTSFMADLPFLSPLGLAIVILSFVYRIQLRKELSEC 409
           R+CK   Y +    +  D     PLGL  ++++     QLR+EL++C
Sbjct: 135 RVCK--TYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQLRQELAKC 179


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 285 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 181
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 372 TKLKITMAKPKGERKGKSAINEVVTREYTVNL 277
           T L + M KP  E KGK    +V+++E  + +
Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,037,524
Number of Sequences: 37544
Number of extensions: 180668
Number of successful extensions: 376
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)