Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i18r
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    26   0.44 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.4  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +1

Query: 184 YSACLSYYLHTETNYVLYN-----YSELLNRILNNPCK*QYPNVSRPNLSYHSS 330
           Y + + YYL T  N +LYN     + E    +L N C       S P  S +SS
Sbjct: 331 YMSGVFYYLSTTVNPLLYNIMSNKFREAFKLMLPNCCGKWSSQKSEPRRSIYSS 384


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 176 WGVIVILWSRLLVINPERSNMATPLLSYSFSHRYK 72
           WG +    S + V N +       +L+Y +S RYK
Sbjct: 293 WGFLPSKDSLVFVDNHDTQRDNPQILTYKYSKRYK 327


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +1

Query: 121 ERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNN 273
           ERS   + +R +R         S+  +  +H   NY   NY+   N   NN
Sbjct: 294 ERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNN 344


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +1

Query: 121 ERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNNPCK*QYPN 297
           E S   + +R +R T       S+  + Y ++  N    NY+   N   NN  K  Y N
Sbjct: 61  ETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +1

Query: 121 ERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNNPCK*QYPN 297
           E S   + +R +R T       S+  + Y ++  N    NY+   N   NN  K  Y N
Sbjct: 61  ETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 732 YAAIFNIILWFGVVFTFTLIAI 667
           +AAI   + +F V+FT+ +I I
Sbjct: 404 FAAIIEWLSFFIVIFTYIIILI 425


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 480 LSHSRFVFHFTIN 442
           L+H  F FH TIN
Sbjct: 495 LNHKPFNFHITIN 507


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 480 LSHSRFVFHFTIN 442
           L+H  F FH TIN
Sbjct: 495 LNHKPFNFHITIN 507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,866
Number of Sequences: 438
Number of extensions: 4844
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)