Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i17r
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   0.79 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   1.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.5  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      22   5.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 614 SGNRHLNYIAVAAADIPGYWSAVFLMAKI 528
           SG  H N+I  A+  IPG  SAVF   K+
Sbjct: 541 SGLSHGNWIYPASMTIPGSNSAVFTNYKL 569


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 666  PPDRRHDTSNQNFLMSKYLN 725
            PP R HD +N +F  SK  N
Sbjct: 1862 PPPRNHDQNNSSFNDSKESN 1881


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -1

Query: 446 YGASLALYLIGKFSIAMVMTSVYVYTAELYPTKYRHSLFAFSSMMGRIGSITAPLTPAFG 267
           + A+LA         A ++T + V TA   PT     LFA   M+ RI +    L   +G
Sbjct: 429 FTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTSINVLGDGYG 488

Query: 266 A 264
           A
Sbjct: 489 A 489


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 672 LVDNKYFCLLWPFHQ 628
           +VD ++FCL W  +Q
Sbjct: 1   MVDTQHFCLRWNNYQ 15


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 672 LVDNKYFCLLWPFHQ 628
           +VD ++FCL W  +Q
Sbjct: 1   MVDTQHFCLRWNNYQ 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,517
Number of Sequences: 438
Number of extensions: 4592
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)