Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i17f
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    29   0.59 
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           29   0.59 
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.0  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    28   1.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.4  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    27   3.1  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   3.1  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   5.5  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   5.5  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   5.5  
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    26   5.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.2  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   7.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   7.2  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   7.2  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   9.5  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 239 WFQLRTVILAAIMVIFAAWGASEFIFTTARISSRCLIPECELASN 373
           W Q+   +L A   IFA+    EF FT A  S + +I    L +N
Sbjct: 476 WIQIPAYVLIAFSEIFASITGLEFAFTKAPPSMKSIITALFLFTN 520


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 428  FDNCFRFENATRRPDVI-GDTCPATLFNRERVVGCD-SFVYQNTDTVVYDYDLACDEWRR 601
            F++   F    + P V+ G   P  L NR      D  F   + DTVV D D+ C+E R+
Sbjct: 1023 FEDTISFFYNKKNPKVVTGVFNPRILANRPYRTNIDYPFKVVDKDTVVLDADVVCEEIRQ 1082

Query: 602  TLIGSIRTL 628
                 IR++
Sbjct: 1083 VGGDLIRSI 1091


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 402 TPSRRPAPDSTTAFVSRTPL 461
           TPS  PAP STTA  SR P+
Sbjct: 188 TPSNGPAPVSTTATPSRNPV 207


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 369  QTPSSLRNGSPTPSRRPAPDSTTA 440
            +TP+   NG P   R PAPD+ T+
Sbjct: 1037 ETPALTLNGKPKKKRGPAPDTLTS 1060


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -3

Query: 537 NESQPTTLSRLNKVAGQVSPITSGLLVAFSKRKQLSNPELVAGMALGFHSGAKTVFEASS 358
           N+SQ  + + L+  +G V+P++         +KQLS P      +L + S   ++ E   
Sbjct: 676 NKSQSNSQNSLSDESGNVTPVS---------KKQLSQPAAAIKASLKYPSHPDSLLEHQD 726

Query: 357 HSG 349
           H+G
Sbjct: 727 HAG 729


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -1

Query: 134 FSTGELPLVYPFLL 93
           +STGELPL YP LL
Sbjct: 197 YSTGELPLSYPTLL 210


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 413 ATSSG-FDNCFRFENATRRPDVIGDTCPATLFNRERVVGCDSFVYQNTDTVVY 568
           AT+ G F+        T +PD+   +C +  +    +V C S +Y  T   ++
Sbjct: 645 ATTFGHFNTLSEHSLPTEKPDLFSTSCGSPCYAAPELVNCKSGMYAGTQADIW 697


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 57  IFYYSITRDRVSQQKWINKRQFT 125
           IFYY++ ++ +  Q+W+ +R  +
Sbjct: 429 IFYYNLNQESLEFQRWLKQRDIS 451


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 369 EASSHSGIRHLELILAVVNMNSLAPQAA 286
           E ++ +G RH+EL L   + N  AP+AA
Sbjct: 194 ENTTKTGKRHIELSLKPQDANGSAPEAA 221


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +3

Query: 321 PPGSVQDA*SRNANWLQTPSSLRNGSPTPSRRPAPDSTTAFVSRTPL 461
           PP  V DA S     +QT   L+N  P   +       TAF   T L
Sbjct: 455 PPSHVLDASSETIEVIQTIKKLQNQVPETIKDEVGKKNTAFSPGTSL 501


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 563 VYDYDLACDEWRRTLIGSI 619
           +Y Y LACD+ ++TL  SI
Sbjct: 149 IYTYPLACDKGKKTLSTSI 167


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 LQTPSSLRNGSPTPSRRPAPDSTTAF 443
           LQ P   RN S  P  RPA  S++ F
Sbjct: 686 LQAPEHARNFSSPPFTRPASPSSSKF 711


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 98  EMDKQAAVHLLKMEDRTKNANGDIEDEGAKQKVNLDTILIEELGQFGWFQLRTVILAAI 274
           E + + A     +E  ++  + + EDE  ++ VNL+     ++ +F   QL   I  AI
Sbjct: 46  EEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLSENIQKAI 104


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 330 SVQDA*SRNANWLQTPSSLRNGSPTPSRRPAPDSTTAFVSRTP 458
           SV  + S  A W +  SS    +P P ++PA   +   +S  P
Sbjct: 415 SVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNP 457


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 PGSVQDA*SRNANWLQTPSSLRNGSPTPSRRPAPDST 434
           P S Q     ++N+ Q  +S R+GS T SR P+   T
Sbjct: 24  PSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGT 60


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = -3

Query: 366 ASSHSGIRHLELILAVVNMNSLAPQAAKITMMAAKITVLSWNQPNCPSSSIRMVSRFTFC 187
           A+ H    HL   + +V  NSL+P +++       ++  S      PSS +        C
Sbjct: 161 ATEHDPFAHLRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDE---C 217

Query: 186 LAPSSSMSP 160
             P+S M P
Sbjct: 218 HPPTSDMQP 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,462
Number of Sequences: 5004
Number of extensions: 61425
Number of successful extensions: 211
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)