Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i17f
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1073 - 30154908-30155534 33 0.20
11_04_0260 - 15509658-15509780,15510092-15510161,15510265-155104... 31 0.80
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658... 29 2.4
10_07_0016 + 11826066-11826773 29 3.2
06_02_0016 - 10623796-10625317,10626493-10627541 29 3.2
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533... 29 3.2
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579... 29 3.2
11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199... 29 4.3
10_07_0181 - 13884007-13884767,13885263-13885329 29 4.3
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502... 29 4.3
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 29 4.3
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 28 5.6
06_01_0793 - 5918912-5919793,5919830-5920285 28 7.5
05_07_0104 + 27715123-27715350 28 7.5
02_05_0648 - 30604258-30604677 23 9.6
12_02_1238 - 27246769-27246948,27247030-27247104,27247848-272479... 27 9.9
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 27 9.9
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 27 9.9
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 27 9.9
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 27 9.9
02_03_0120 + 15463163-15465250 27 9.9
>03_05_1073 - 30154908-30155534
Length = 208
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -2
Query: 532 VAADNPLPIEQGGGAGVADHVWSSSGVLETKAVVESGAGRRDGVGLPFRSEDGV*SQFAF 353
+A +PLP GG G DH W+ + + T + A V P R + S F F
Sbjct: 21 LATVSPLPGRHKGGGGGRDHPWTLTVYIHTTTAAAAAAAAAGTVSPPQRQQQA--SAFVF 78
Query: 352 R 350
R
Sbjct: 79 R 79
>11_04_0260 -
15509658-15509780,15510092-15510161,15510265-15510438,
15511098-15511528
Length = 265
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 499 GGGAGVADHVWSSSGVLETKA--VVESGAGRRDGVGL 395
GGG G W++ E++ E GAGRRDG GL
Sbjct: 58 GGGGGEQGGGWANGSGYESRYGNSYEQGAGRRDGAGL 94
>01_06_1815 -
40064351-40064887,40064987-40065634,40065834-40065890,
40065921-40065941,40066714-40066941
Length = 496
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +2
Query: 248 LRTVI---LAAIMVIFAAWGASEFIFTTARISSRCLIPECELASNTVFAPEWKPNAIPAT 418
LRT+I ++A++V+ A +G +I++ RI+ + C A++ W PN++
Sbjct: 276 LRTLIDFLVSAVIVMSACFGYGTYIYSYQRITD--VTSACS-ATSKGSKSWWMPNSVSNF 332
Query: 419 SSGF 430
SSGF
Sbjct: 333 SSGF 336
>10_07_0016 + 11826066-11826773
Length = 235
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -2
Query: 499 GGGAGVADHVWSSSGVLETKAVVESGAGRRDGVGLPFRSEDGV*SQFAFRDQAS*TDPGG 320
GGGA D W++ G ++ + A R +G + G A RD+A+ D
Sbjct: 24 GGGARRVDGRWTAYGCMQRRRCRWMAAAREEGAADGQTAACGAGRWAAARDEAAAQDEAA 83
Query: 319 GKYELTGSPSSEDH 278
+ E G+ H
Sbjct: 84 ARDEEAGADGGRLH 97
>06_02_0016 - 10623796-10625317,10626493-10627541
Length = 856
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 194 VNLDTILIEELGQFGWFQLRTVILAAIMVIFAAW--GASEFIFTTARISSRCLIPECELA 367
VNL +++EE G LRTV++ ++ + AA+ G+ + +T +S+ + LA
Sbjct: 104 VNLLLLVLEEASTVGLAMLRTVMVLDVLALMAAYAAGSCRDLPSTVYVSTLVVALSTYLA 163
Query: 368 SNTVFAPEWKPNAIPATSS 424
++ P I AT++
Sbjct: 164 IRIIYQTGGNP-LISATTT 181
>05_01_0594 -
5337804-5337976,5338282-5338436,5338591-5338745,
5338864-5338992,5339096-5339189,5339293-5339366,
5339716-5339851,5341546-5341562
Length = 310
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 360 NWLQTPS-SLRNGS--PTPSRRPAPDSTTAFVSRTPLED 467
N+L+TP +LR+ PTP + P+ + T V+R+ LED
Sbjct: 196 NYLKTPMRTLRSDPRPPTPDQAPSEEGATDSVNRSNLED 234
>02_03_0052 -
14456925-14457176,14457277-14457437,14457843-14457914,
14458105-14458221,14458310-14458322,14458917-14458946,
14459837-14460010,14460276-14460417,14460731-14460792,
14461047-14461643
Length = 539
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -3
Query: 234 NCPSSSIRMVSRFTFCLAPSSSMSPLAFFVRSSIF 130
+C S I MV TFC S PLAF V IF
Sbjct: 317 SCGQSLIGMVLVTTFCYLKSVVQVPLAFIVAPDIF 351
>11_01_0261 -
1989988-1990090,1990232-1990368,1990483-1990589,
1990708-1990786,1990952-1991038,1991688-1991966,
1992109-1992822
Length = 501
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +2
Query: 131 KMEDRTKNANGDIEDEGAKQKVNLDTILIEELGQFGWFQLRTVILAAIMVIFAAWGASEF 310
+ME++ +N +DEG K+K ++ L+E G G F ++ + ++ A + +
Sbjct: 254 RMEEKAENGGSIGDDEGKKEKKDMVEELLEAEG--GSFSEEEMVDFCLSLLVAGYETTSM 311
Query: 311 IFTTA 325
+ T A
Sbjct: 312 LMTLA 316
>10_07_0181 - 13884007-13884767,13885263-13885329
Length = 275
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Frame = +2
Query: 323 ARISSRCLIPECELASNTVFAPEWKPNAIPATSSGFDNCFRFEN---ATRRPDVIGDTCP 493
A +C+IP C N V PE + A A + C F R +TC
Sbjct: 165 AAADRKCVIPGCAKNVNAVCPPELQVTAAAAVVACKSACVAFGTDAFCCRGAHGTAETCR 224
Query: 494 ATLFNRERVVGCDSFVYQNTDT 559
+ ++R C ++V DT
Sbjct: 225 GSAYSRVFRDACPAYVSYPYDT 246
>09_04_0479 -
17948043-17949037,17949554-17949715,17949809-17950262,
17952895-17953326
Length = 680
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 506 NRERVVGCDSFVYQNTDTVVYDYDLACD 589
N+ V+GC + Y TD+ V ACD
Sbjct: 127 NKITVIGCKTLAYMTTDSYVIGCSSACD 154
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 249 SWNQPNCPSSSIRMVSRFTFCLAPS--SSMSPLAF 151
SW P C RMVS F F P+ SS+S L F
Sbjct: 758 SWYPPPCHLEMFRMVSHFYFPRLPNWMSSLSELTF 792
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 372 TPSSLRNGSPTPSRRPAPDSTTAFVSRTP 458
+PS+ + S +PS P+PDS TA S +P
Sbjct: 613 SPSATSSLSSSPSPAPSPDSATASRSASP 641
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Frame = +2
Query: 266 AAIMVIFAAWGASEFIFTTARISSRCLIPECELASN--TVFA----PEWKPNAIPATSSG 427
A+I + W F S + C LA T+ A PEW+P+A ++G
Sbjct: 144 ASIFQVLGVWAQKASFFVDHGASGMSVAKRCSLAMERCTLAAMRSCPEWEPDAFQQVAAG 203
Query: 428 FDN 436
N
Sbjct: 204 LKN 206
>05_07_0104 + 27715123-27715350
Length = 75
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 325 GGGKYELTGSPSSEDHH 275
GGGK+E+ G P + HH
Sbjct: 59 GGGKWEVPGGPDPQHHH 75
>02_05_0648 - 30604258-30604677
Length = 139
Score = 23.4 bits (48), Expect(2) = 9.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 557 CLCSDRRMSRSRQPSP 510
CLC R SRS P P
Sbjct: 9 CLCRSRSRSRSLSPPP 24
Score = 22.6 bits (46), Expect(2) = 9.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -1
Query: 407 WRWASIPERRRCLKPVRIPGSG 342
W+W + PER R + G G
Sbjct: 36 WKWETEPERGRVFRCFDTDGDG 57
>12_02_1238 -
27246769-27246948,27247030-27247104,27247848-27247959,
27248213-27248295,27248544-27248791,27249448-27249533,
27250131-27250210,27250310-27250480,27250998-27251099,
27251591-27251743,27252459-27252575,27252715-27252804,
27253057-27253196,27253339-27253396,27253931-27254010,
27254215-27254349,27254482-27254646,27254982-27255021
Length = 704
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 65 LFNNKRPCVTAEMDKQAAVHLLKMEDRTKNANGDIEDEGAKQKVNLDTILIEE 223
+F NK T+E +K + + ++ +E +NAN I D GA + NLD +EE
Sbjct: 447 VFGNK----TSENEKMSML-VVSIEKVDRNANA-INDSGANPEYNLDEPTMEE 493
>07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +2
Query: 464 RPDVIGDTCPATLFNRERVVGCDSFVYQNTDTVVYDYDLACDEWRRTLIGSIRTLGTLMA 643
RPD T +F+ E V S QNT V D D W + IG + LGT +A
Sbjct: 965 RPD---KTSTPQIFSTENTVVAPSPTAQNTSADVTDTGDK-DVWNKRQIGYVYILGTSLA 1020
Query: 644 L 646
+
Sbjct: 1021 V 1021
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 185 KQKVNLDTILIEELGQFGWFQLRTVILAAIMVIFAAWGASEFIFTTARISSRC 343
K++V++D L G+FG +QLR +L + + A IF + C
Sbjct: 20 KRRVSIDDALAWHAGEFGRWQLRHFVLVSSAWLLEALHTMVIIFADREPAMVC 72
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Frame = +3
Query: 357 ANWLQT-------PSSLRNGSPTPSRRPAPDSTTAFVSRTPL 461
++WLQT P S+ +G+P+PS P+P + T R+PL
Sbjct: 1100 SSWLQTAKEQPAPPPSVTSGNPSPSPSPSPTAPTN-AWRSPL 1140
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 351 RNANWLQTPSSLRNGSPTPSRRPAPDSTTAFV 446
RN+ + PSS++ PS+R P STT+ V
Sbjct: 1431 RNSEDMDLPSSVKGKLGGPSQRRLPTSTTSLV 1462
>02_03_0120 + 15463163-15465250
Length = 695
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = +3
Query: 294 GEPVSSYLPPPGSVQDA*SRNANWLQTPSSLRNGSPTPSRRPAP 425
G P SSY PPP N L P S P PS P P
Sbjct: 276 GFPNSSYAPPPTKYIGPMPPNNQPLPPPPSPSPSPPPPSPPPPP 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,435,401
Number of Sequences: 37544
Number of extensions: 489091
Number of successful extensions: 1787
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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