Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i17f
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.84 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 484 HLPRHLVQSGEGCRLRLIRLSEH 552
           H P H +Q      L+ IRLS H
Sbjct: 917 HFPHHQIQVSTSAGLQTIRLSGH 939



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 354 NANWLQTPSSLRNGSPTPSRRPAPDSTTAFVSR 452
           N N  Q+P+S +  +P   R+ A  +     SR
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTATTTQPVISSR 808


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 352  RDQAS*TDPGGGKYELTGSPSSEDHHDGSQDHGPQLEP 239
            RDQ    D       +T + ++ +   G+ D+ PQL+P
Sbjct: 1091 RDQKQSDDKTKETSTVTAAAAATNIRPGTADNKPQLKP 1128


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 300 APQAAKITMMAAKITVLSWNQPN 232
           APQ   +  +      LSWN P+
Sbjct: 320 APQNLTVNFVDQSTVFLSWNAPH 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,008
Number of Sequences: 438
Number of extensions: 4645
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)