Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i15f
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical ... 182 1e-46
AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical ... 182 1e-46
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical... 29 2.9
AF014940-1|AAB63933.1| 143|Caenorhabditis elegans Hypothetical ... 28 6.7
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 8.8
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 27 8.8
U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate recep... 27 8.8
>AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical
protein F46E10.10b protein.
Length = 273
Score = 182 bits (444), Expect = 1e-46
Identities = 89/144 (61%), Positives = 109/144 (75%)
Frame = +1
Query: 211 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 390
M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+ +LEGVV EL DC
Sbjct: 1 MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60
Query: 391 ALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVA 570
ALP L V+ + + AF + AFLVGAMPR+EGMERKDLLAANV+IFK QG+AL + A
Sbjct: 61 ALPTLFSVVAVTDEKSAFTGIDYAFLVGAMPRREGMERKDLLAANVKIFKSQGKALAEYA 120
Query: 571 RKDVKVLVVGNPANTNALICSKYA 642
+ KV+VVGNPANTNA I +KYA
Sbjct: 121 KPTTKVIVVGNPANTNAFIAAKYA 144
>AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical
protein F46E10.10a protein.
Length = 336
Score = 182 bits (444), Expect = 1e-46
Identities = 89/144 (61%), Positives = 109/144 (75%)
Frame = +1
Query: 211 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 390
M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+ +LEGVV EL DC
Sbjct: 1 MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60
Query: 391 ALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVA 570
ALP L V+ + + AF + AFLVGAMPR+EGMERKDLLAANV+IFK QG+AL + A
Sbjct: 61 ALPTLFSVVAVTDEKSAFTGIDYAFLVGAMPRREGMERKDLLAANVKIFKSQGKALAEYA 120
Query: 571 RKDVKVLVVGNPANTNALICSKYA 642
+ KV+VVGNPANTNA I +KYA
Sbjct: 121 KPTTKVIVVGNPANTNAFIAAKYA 144
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 243 CCRTNCILTSLSNCVWSSFWTSATCLPPPS*YCAYDGCT*RCCHGVG*LCSATFGWGSS 419
C + + S N + ++A+ P + YC YDG T CC CS ++ G+S
Sbjct: 470 CIQGTALTDSNGNFIICGGSSAASTTCPANHYCYYDGTTYGCCPTQAYTCSLSYKSGAS 528
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = -3
Query: 599 PTTRTFTSLRAT-LSKAWPCS-LKMRTLAARRSFLSIPSFLGIAP---TRKAAATSLKAS 435
P RT RAT L+K P S R RS + P P T KA + K +
Sbjct: 288 PAPRTAVPSRATVLTKTAPASKAPTRAPVPARSAPAPPRGAPAKPAANTAKAEPIAQKKT 347
Query: 434 SGFAVGRTPAKSGRAQSANSMTTPSSTP 351
G G P+K A A++ T+P+ P
Sbjct: 348 VGKVQGTAPSKPAPAAPASAATSPAPAP 375
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = -3
Query: 599 PTTRTFTSLRAT-LSKAWPCS-LKMRTLAARRSFLSIPSFLGIAP---TRKAAATSLKAS 435
P RT RAT L+K P S R RS + P P T KA + K +
Sbjct: 288 PAPRTAVPSRATVLTKTAPASKAPTRAPVPARSAPAPPRGAPAKPAANTAKAEPIAQKKT 347
Query: 434 SGFAVGRTPAKSGRAQSANSMTTPSSTP 351
G G P+K A A++ T+P+ P
Sbjct: 348 VGKVQGTAPSKPAPAAPASAATSPAPAP 375
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = -3
Query: 599 PTTRTFTSLRAT-LSKAWPCS-LKMRTLAARRSFLSIPSFLGIAP---TRKAAATSLKAS 435
P RT RAT L+K P S R RS + P P T KA + K +
Sbjct: 288 PAPRTAVPSRATVLTKTAPASKAPTRAPVPARSAPAPPRGAPAKPAANTAKAEPIAQKKT 347
Query: 434 SGFAVGRTPAKSGRAQSANSMTTPSSTP 351
G G P+K A A++ T+P+ P
Sbjct: 348 VGKVQGTAPSKPAPAAPASAATSPAPAP 375
>AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical
protein Y59A8B.13 protein.
Length = 417
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 602 LPTTRTF--TSLRATLSKAWPCSLKMRTLAARRSF 504
LPTT+ F TS T+ + W C + + L+++RS+
Sbjct: 42 LPTTQKFRQTSNGRTMKQTWTCGVCRKELSSKRSY 76
>AF014940-1|AAB63933.1| 143|Caenorhabditis elegans Hypothetical
protein W02D7.3 protein.
Length = 143
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 434 SGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWRKTGC 309
+ +A +P S ++S S + S+TP A+SRR GC
Sbjct: 71 TNYAKRHSPPPSYSSRSKQSSVSSSATPTKSAVSRRNYLAGC 112
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 27.5 bits (58), Expect = 8.8
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Frame = -3
Query: 599 PTTRTFTSLRATLS-KAWPCSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFA 423
P TRT RAT KA P S P A KA + K +G
Sbjct: 344 PATRTAVPPRATAPPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGKV 403
Query: 422 VGRTPAKSGRAQSANSMTTPSST 354
P+K A SA T P+ST
Sbjct: 404 QRAAPSKPASAVSAPKATAPAST 426
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 27.5 bits (58), Expect = 8.8
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Frame = -3
Query: 599 PTTRTFTSLRATLSKAWPCSLKMRTLAARRSFLSIPSFLGIAPTR--KAAATSLKASSGF 426
P TRT RAT S + A S P+ AP + KA A + K +G
Sbjct: 366 PATRTAVPPRATAPPK-AASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGK 424
Query: 425 AVGRTPAKSGRAQSANSMTTPSST 354
P+K A SA T P+ST
Sbjct: 425 VQRAAPSKPASAVSAPKATAPAST 448
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = -2
Query: 423 CRKNPSQKWQSTVSQLHDNTFK 358
C K+P ++WQ + +H++T++
Sbjct: 3689 CAKSPCEQWQLCIPSVHNSTYE 3710
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = -2
Query: 423 CRKNPSQKWQSTVSQLHDNTFK 358
C K+P ++WQ + +H++T++
Sbjct: 3689 CAKSPCEQWQLCIPSVHNSTYE 3710
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = -2
Query: 423 CRKNPSQKWQSTVSQLHDNTFK 358
C K+P ++WQ + +H++T++
Sbjct: 3689 CAKSPCEQWQLCIPSVHNSTYE 3710
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2
Query: 522 SSKKILPLHTFLSGH 478
SSKK LP +T+LSGH
Sbjct: 172 SSKKSLPTYTYLSGH 186
>U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 5 protein.
Length = 932
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 381 QLHDNTFKYTHHRRNIKKVEEDRLLRSKNCS 289
++HD Y R +K++EE RLL K+CS
Sbjct: 184 KVHDGD--YMKAARQVKELEECRLLHKKDCS 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,851,806
Number of Sequences: 27780
Number of extensions: 302128
Number of successful extensions: 1040
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -