Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i14f
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.34 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   3.1  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    26   4.2  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   7.3  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   7.3  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   9.6  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 380 CLRCWGKSGNWNSWR 336
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 410 LNAYYYYFHSHLPFWWNSGKYGAFK 484
           LN Y  YF +H P      K+G+FK
Sbjct: 119 LNKYASYFQAHEPTLQKLAKFGSFK 143


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 537 TTWSVLPMDWVKSLSFPGTRLFELATSRLSXPFIIHLPK 653
           T W+V+  D V  L       FE+ATS    P ++ LPK
Sbjct: 209 TKWNVMVKD-VADLPRRIDEAFEIATSGRPGPVLVDLPK 246


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 293 YNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTEDV--GLNAYYY 427
           YN+     N++   +   ++  T  N +++  YLT DV  G + YYY
Sbjct: 233 YNFNFSAPNKRMQRFT--ASEATTVNGQNQSVYLTYDVPYGRSLYYY 277


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +2

Query: 272 CLDEKICYNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTEDVGLNAYYYYFHSH 442
           C+  K   +    K       + ++SNSL + + ++       DV  N Y  YF  H
Sbjct: 55  CISGKFVKSLASKKYGAHLGRFTHHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGH 111


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +2

Query: 110 YMNQGMFLYAYYIAIIQRSDTASFVLPAPYEAYPQYFVNMEVKNKMDYVKMMDG 271
           YM +    YA+ I + + S+T   + P+  E    +   +   N ++++   DG
Sbjct: 213 YMKENNKAYAFTITVTEYSETIPSLWPSTKEFIKMHPNALHPNNALNFISNDDG 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,719
Number of Sequences: 5004
Number of extensions: 55707
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)