Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i12f
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   2.2  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   2.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.9  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   6.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.7  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   6.7  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   6.7  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   6.7  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   8.9  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   8.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   8.9  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 84  PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 179
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 158 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 337
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 338 VKAKN 352
            K  N
Sbjct: 163 SKKLN 167


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 122  YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 277
            +  Y  F    +E   +T S + NL  E+++L NM+ EL  KFP +   GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 479  LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVD 601
            +K ++PE + +PV    +  ST  + +E E T +++V   +
Sbjct: 908  IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 71  AAVSAAPQYYHGSSHWPYHHYDPFSP 148
           A  +A PQYY     +P  HY P  P
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQP 527


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 612 SKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLLSS 496
           S PTSTS T+ S  +S SS  +    +S  S++    SS
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSS 319


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 205 NATLGQHDEGAVVEVPQHYKRRTRGRRQVSDIYSPAWLRTERHQRESEKWSAD 363
           + TL +    ++  VP     RT  +R  SD  +  W+ + R Q+  E+W  D
Sbjct: 583 DGTLIESARNSIDAVPTDRLLRTL-KRLASDSRNIVWILSGRSQKFMEEWMGD 634


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 624 FWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLL 502
           +WA+   T      L++++S+    T    +SV +A GLLL
Sbjct: 89  WWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 473 FPLKQKQPEDSKRPVAEPTETTSTNVSRE 559
           F  K    +  K P  EPTE   +N+S E
Sbjct: 885 FSFKAFGIDSKKSPTPEPTEMAESNISEE 913


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 122 YHHYDPFSPYVRESMLDTHSLWSNL 196
           + H+DP+S ++  ++ + H  W+ L
Sbjct: 292 FFHFDPYSLFISNNLEEIHINWNIL 316


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 30/117 (25%), Positives = 43/117 (36%)
 Frame = +2

Query: 239 SLKFPSIINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPW 418
           +L+ P+I ++G V       ++ L        +V+   G  M  A SA   +    NLP 
Sbjct: 157 NLRSPAIDSDGTVLAPIQTSNVDLGSQYYSSPHVRPAVGATM--AGSAMRTFPS--NLPL 212

Query: 419 DVNSEGSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV 589
                 S      V  I  PL          P       TS   +REE ++T  SNV
Sbjct: 213 GHPPPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVPNREEKDWTVTSNV 269


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 612 SKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLLSS 496
           S PTS+S    S + +ISS ++   + S  S+   +LSS
Sbjct: 544 SIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSS 582


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 485 QKQPEDSKRPVAEPTE---TTSTNVSREEME 568
           Q  P DSK P  E  E   T++T VS E++E
Sbjct: 355 QATPADSKEPRKEEAEKPVTSATEVSSEKVE 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,045
Number of Sequences: 5004
Number of extensions: 53068
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)