Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i10r
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.5  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    29   4.7  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    29   4.7  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    29   4.7  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    29   4.7  
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical pr...    28   8.2  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   8.2  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 719 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 609
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 719 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 609
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 477 RQSENVALVHKLNGVFGEDKSELNWETITD 566
           +   N AL+H+  G + E K + NWE   D
Sbjct: 418 QDESNGALIHQFKGGYWEAKEQQNWEKCPD 447


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 477 RQSENVALVHKLNGVFGEDKSELNWETITD 566
           +   N AL+H+  G + E K + NWE   D
Sbjct: 811 QDESNGALIHQFKGGYWEAKEQQNWEKCPD 840


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 477 RQSENVALVHKLNGVFGEDKSELNWETITD 566
           +   N AL+H+  G + E K + NWE   D
Sbjct: 596 QDESNGALIHQFKGGYWEAKEQQNWEKCPD 625


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 477 RQSENVALVHKLNGVFGEDKSELNWETITD 566
           +   N AL+H+  G + E K + NWE   D
Sbjct: 735 QDESNGALIHQFKGGYWEAKEQQNWEKCPD 764


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -3

Query: 747 AALP*HRRCRLRQCG*KEQAFIRGEEERSHHKCSEQTDTKQQDELHGVRLSTLAPGLQGH 568
           A L  HR  +LRQC  KE+  +    ER     +  +  K  D +    L T   GL  H
Sbjct: 294 AVLIRHREQQLRQCVQKEKENVESFFERVEKLVAMTSSGKSIDYIQSTALHTFLEGLGDH 353


>Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical
           protein F08G12.3 protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 477 RQSENVALVHKLNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVH 620
           R+  N+ L  +L+G FG  +  L W+   + +   + PKL   L+A +
Sbjct: 317 RKISNIGL-RELSGFFGAARKPLPWDAKENQIFEMVFPKLAVFLYATN 363


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -1

Query: 722 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 549
           A Y S  +K +   EEK  E I N +    R    K   +    ++ L+ S+D+ RDC  
Sbjct: 29  ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87

Query: 548 VEFRLIFA 525
           ++    FA
Sbjct: 88  IDMDAYFA 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,512,573
Number of Sequences: 27780
Number of extensions: 342242
Number of successful extensions: 1130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)