Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i08r
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 69 7e-13
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 39 7e-04
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 29 0.72
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.72
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 3.8
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 3.8
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac... 26 6.7
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 8.9
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 68.9 bits (161), Expect = 7e-13
Identities = 42/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Frame = -3
Query: 690 LIVTFGITCYYTFHDIPTPSEAKLVVDISRW-----PLFLSTAIFAMEGINVVMPVENEM 526
+ + GI Y F D+ T + K + D++ + LF+ AIF EGI +++P++ +M
Sbjct: 424 VFILLGILYLY-FWDVITLA-TKGIADVAMFNKTDFSLFIGVAIFTYEGICLILPIQEQM 481
Query: 525 AKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSVTINLPQDEILALIAKFL 346
AKP+ P +L M +++L+ +G+ Y +G++V V +N+P+ +I +FL
Sbjct: 482 AKPKNL---PKLLTGVMAAISLLFISIGLLSYAAFGSKVKTVVILNMPESTFTVII-QFL 537
Query: 345 VAIAVFFTYCLQMYAPMDII 286
AIA+ + LQ++ + II
Sbjct: 538 YAIAILLSTPLQLFPAIAII 557
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 39.1 bits (87), Expect = 7e-04
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = -3
Query: 495 GVLNFTM----IFVAVLYGVVGIFGYLKYGNEVMGSVTINLPQDEILALIAKFLVAIAVF 328
G +NFTM I +LY +V I GYL +G+ G++ I + K + + V
Sbjct: 235 GFVNFTMFTAIISSTLLYLLVAITGYLSFGSLASGNIIAMYDNTSIWIIGGKLAIVVLVL 294
Query: 327 FTYCLQMYAPMDIIWTRLK----PH-IGSGYH 247
F+Y LQ + + ++ ++ H + GYH
Sbjct: 295 FSYPLQCHPCRNSVYQAIRRSYSAHDMSDGYH 326
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 29.1 bits (62), Expect = 0.72
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -3
Query: 417 NEVMGSVTINLPQDEILALIAKFLV-AIAVFFT-YCLQMYAPMDIIWTRLKPHIGS-GYH 247
N + S+ LP DE L+ + FLV ++A T YC Q P+D + +R++ S Y
Sbjct: 185 NSIKQSLQSRLPPDEKLSTVTTFLVGSVAGIITVYCTQ---PIDTVKSRMQSLSASKEYK 241
Query: 246 NS 241
NS
Sbjct: 242 NS 243
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.72
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Frame = +2
Query: 323 VKNTAIATKNFAISASISSCGKFMVTLPM--------TSFPYLR*PNIPTTPYNTATNIM 478
V +T +AT N S S+ + + P+ TS PY P + +TP T TN
Sbjct: 440 VTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTP-VTSTPL-TTTNCT 497
Query: 479 VKFNTP--GQPRNFSGFAISFSTGITTLMPSIAN 574
+ P P S + IS ST +T+ + N
Sbjct: 498 TSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 645 IPTPSEAK-LVVDISRWPLFLSTAIFAMEGINVVMPVENEMAKPEK 511
+P PS AK V ++TA + VVMPV N A PEK
Sbjct: 390 LPKPSFAKQAAVGSQSSTTSMTTARLLSDRFPVVMPVANTAAIPEK 435
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 262 WKRLSQFSPNSTKDS*RC 209
WK+LS F P+S K+ +C
Sbjct: 97 WKKLSDFEPHSKKNDTKC 114
>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -2
Query: 331 ILHVLPANVRAYGYYLD*TETSYWKRLSQFSPN 233
ILH R YG YL T WKR F+ N
Sbjct: 96 ILHHFDTTAR-YGPYLGMTRMQRWKRAKNFNLN 127
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 437 NIPTTPYNTATNIMVKFNTPGQPRNFSGFAISFSTGIT---TLMPSIA--NIAVLKNNGH 601
++P+T Y+ T F++ + G + S+G+T + P ++ NI + N H
Sbjct: 321 SVPSTSYHANTASEDGFSSSYNSQGLFGISSPLSSGVTPNQSFFPDVSGNNIFDVSRNNH 380
Query: 602 LEISTTNFASEGVGIS 649
E+S+ S G +S
Sbjct: 381 -EVSSPLIQSPGSYVS 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,303
Number of Sequences: 5004
Number of extensions: 77840
Number of successful extensions: 238
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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