Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i08r
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical ... 123 1e-28
AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical ... 119 2e-27
U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical pr... 87 2e-17
U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical pr... 87 2e-17
Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical pr... 86 2e-17
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 81 1e-15
Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical pr... 76 3e-14
AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical ... 46 4e-05
U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical p... 37 0.014
AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein. 37 0.014
AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical ... 37 0.018
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 36 0.031
AC103567-4|AAL35731.2| 598|Caenorhabditis elegans Hypothetical ... 35 0.072
AF024503-2|AAG24099.1| 331|Caenorhabditis elegans Serpentine re... 34 0.095
Z70034-12|CAA93859.1| 235|Caenorhabditis elegans Hypothetical p... 32 0.51
Z68318-9|CAA92698.1| 235|Caenorhabditis elegans Hypothetical pr... 32 0.51
U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical pr... 31 0.67
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 31 0.89
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 31 0.89
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 31 0.89
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 31 0.89
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 31 0.89
AC006610-3|AAK85449.1| 264|Caenorhabditis elegans Hypothetical ... 31 1.2
AL021386-3|CAA16167.1| 330|Caenorhabditis elegans Hypothetical ... 30 2.1
Z99283-5|CAE46680.1| 308|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z99283-4|CAB16534.1| 342|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical ... 29 4.7
>AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical
protein Y43F4B.7 protein.
Length = 455
Score = 123 bits (297), Expect = 1e-28
Identities = 71/240 (29%), Positives = 111/240 (46%)
Frame = -3
Query: 723 LVPFSLFSNLCLIVTFGITCYYTFHDIPTPSEAKLVVDISRWPLFLSTAIFAMEGINVVM 544
L PF++ +N+ +V + ++ D+ S + PLF T +FA EG+ V+M
Sbjct: 204 LAPFAMAANVVYVVAVAVVLFFFLSDLRPISSLPWFGKATDLPLFFGTVMFAFEGVAVIM 263
Query: 543 PVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSVTINLPQDEILA 364
P+EN M P F+ GVLN + + V ++ V G +GYL GN+V + T+NLP
Sbjct: 264 PIENRMQSPHAFISWNGVLNSSCLVVLAIFSVTGFYGYLSLGNDVKDTATLNLPMTPFYQ 323
Query: 363 LIAKFLVAIAVFFTYCLQMYAPMDIIWTRLKPHIGSGYHNSAQIXXXXXXXXXXXXLAIA 184
I K + + +Y LQ Y PM+ I + I +A
Sbjct: 324 TI-KLMFVACIMISYPLQFYVPMERIEKWITRKIPVDKQTLYIYIARYSGVILTCAIAEL 382
Query: 183 IPDLGLLIGLVGAIFFSTLGILIPVIVQTVHKWNKTSLGSYLLWKNGCLLIIYFIVLISG 4
IP L L I L+GA +++ +L P ++ + + K L + L KN LL FI +G
Sbjct: 383 IPHLALFISLIGAFSGASMALLFPPCIELLTSYAKNELSTGLWIKNIVLLTFAFIGFTTG 442
>AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical
protein T27A1.5 protein.
Length = 449
Score = 119 bits (287), Expect = 2e-27
Identities = 68/240 (28%), Positives = 116/240 (48%)
Frame = -3
Query: 723 LVPFSLFSNLCLIVTFGITCYYTFHDIPTPSEAKLVVDISRWPLFLSTAIFAMEGINVVM 544
L P + +N I+ I F D + PLF T +FA EG+ VV+
Sbjct: 194 LAPLAAVANFVYIIAVVIVLADLFSDWQPLDSLPAFGAVENLPLFFGTVMFAFEGVAVVL 253
Query: 543 PVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSVTINLPQDEILA 364
P+EN+M +P F+ GVLN + I V ++Y VG FG+L+YGN++ ++T+NLPQ
Sbjct: 254 PIENQMNEPIHFITPNGVLNTSCILVLLVYMTVGFFGFLRYGNDIKDTLTLNLPQTPFYQ 313
Query: 363 LIAKFLVAIAVFFTYCLQMYAPMDIIWTRLKPHIGSGYHNSAQIXXXXXXXXXXXXLAIA 184
I K + + + +Y LQ Y PM+ + +K + +A
Sbjct: 314 AI-KVMFVLCILVSYPLQFYVPMERVEKWIKRKVVEAKQEPMIYAIRFGGVLLTCAMAQL 372
Query: 183 IPDLGLLIGLVGAIFFSTLGILIPVIVQTVHKWNKTSLGSYLLWKNGCLLIIYFIVLISG 4
IP L L I LVG++ ++L ++ P +++ + ++K L ++ +N L+ + +G
Sbjct: 373 IPHLALFISLVGSVAGTSLTLVFPPLIELLCSYSKQELTKWVWIRNIGLMAFAMVGFTTG 432
>U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical
protein C44B7.6b protein.
Length = 434
Score = 86.6 bits (205), Expect = 2e-17
Identities = 40/104 (38%), Positives = 64/104 (61%)
Frame = -3
Query: 582 TAIFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMG 403
T ++A+EG +V+P+EN M KPE G GVL+ + V V+Y G FG+L YGN+V
Sbjct: 224 TILYALEGQAMVLPLENRMKKPEDMKGPFGVLSVGVGMVVVIYSFAGFFGFLTYGNDVQD 283
Query: 402 SVTINLPQDEILALIAKFLVAIAVFFTYCLQMYAPMDIIWTRLK 271
S+T+NLP D L + K ++ V+ + +Q++ + +IW +K
Sbjct: 284 SITLNLPNDH-LGIFVKAVLLFVVYSGFLIQVFPIVAMIWPAIK 326
>U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical
protein C44B7.6a protein.
Length = 489
Score = 86.6 bits (205), Expect = 2e-17
Identities = 40/104 (38%), Positives = 64/104 (61%)
Frame = -3
Query: 582 TAIFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMG 403
T ++A+EG +V+P+EN M KPE G GVL+ + V V+Y G FG+L YGN+V
Sbjct: 279 TILYALEGQAMVLPLENRMKKPEDMKGPFGVLSVGVGMVVVIYSFAGFFGFLTYGNDVQD 338
Query: 402 SVTINLPQDEILALIAKFLVAIAVFFTYCLQMYAPMDIIWTRLK 271
S+T+NLP D L + K ++ V+ + +Q++ + +IW +K
Sbjct: 339 SITLNLPNDH-LGIFVKAVLLFVVYSGFLIQVFPIVAMIWPAIK 381
>Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical
protein H32K16.1 protein.
Length = 481
Score = 86.2 bits (204), Expect = 2e-17
Identities = 62/206 (30%), Positives = 96/206 (46%), Gaps = 4/206 (1%)
Frame = -3
Query: 708 LFSNLCLIVTFG-ITCYYTFHDIPTPSEAKLVVDISRWPLFLSTAIFAMEGINVVMPVEN 532
LF N+ + IT H E V I L I++ EG +V+P+EN
Sbjct: 225 LFGNVIIFAAIVLITKELMVHTWYPTWELGSVTGIEGISLAAGALIYSFEGQAMVLPMEN 284
Query: 531 EMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSVTINLPQDEILALIAK 352
+ P+ G GVL+ M V VLY +G FGY+ +G V GS+T+NLP + IL + K
Sbjct: 285 SLKYPKDMTGATGVLSTAMNLVTVLYAFLGFFGYVTFGPAVQGSLTLNLP-NSILTVSIK 343
Query: 351 FLVAIAVFFTYCLQMYAPMDIIWTRLKPHIGSG---YHNSAQIXXXXXXXXXXXXLAIAI 181
L+ + +FF +Q+Y + ++ L+ I H +A+ +
Sbjct: 344 GLLVLKIFFGSAIQLYVIVQMLLPSLRSKISEDRKMVHRLLPYALRLGLMLISLCIALIV 403
Query: 180 PDLGLLIGLVGAIFFSTLGILIPVIV 103
P+L +I LVG T G+LI +I+
Sbjct: 404 PNLMQIIPLVGI----TSGLLISLIL 425
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 80.6 bits (190), Expect = 1e-15
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Frame = -3
Query: 594 LFLSTAIFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGN 415
L + I++ EG +V+P+EN + P+ G GVL+ M V V Y +G FGY+ +G
Sbjct: 236 LAAGSLIYSFEGQAMVLPLENSLKHPQDMRGLTGVLSTAMNVVIVFYAFLGFFGYIAFGP 295
Query: 414 EVMGSVTINLPQDEILALIAKFLVAIAVFFTYCLQMYAPMDIIWTRLKPHIGSG---YHN 244
+V GS+T+NLP + +L++ K L+ + V LQ++ + ++ L+ + H
Sbjct: 296 DVRGSLTLNLP-NSVLSVTVKGLLVLKVLLGNALQLFIIVQMLLPSLQAKVSENRKLIHK 354
Query: 243 SAQIXXXXXXXXXXXXLAIAIPDLGLLIGLVGAIFFSTLGILIPVIV 103
LA+A+P+L +I VG T G+LI +I+
Sbjct: 355 ILPYALRLSLMLVSLSLALAVPNLTEIIPFVGI----TSGLLISLII 397
>Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical
protein F59B2.2 protein.
Length = 460
Score = 75.8 bits (178), Expect = 3e-14
Identities = 45/214 (21%), Positives = 95/214 (44%), Gaps = 4/214 (1%)
Frame = -3
Query: 714 FSLFSNLCLIVTFGITCYYTFHDIPTPSEAKLVVDISRWPLFLSTAIFAMEGINVVMPVE 535
F+L S++ ++ + YT + + + + +++A EG +++P+E
Sbjct: 198 FALVSSVFFVIGAAVIMQYTVQQPNQWDKLPAATNFTGTITMIGMSMYAFEGQTMILPIE 257
Query: 534 NEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSVTINLPQDEILALIA 355
N++ P FL GVL+ TMI +G FGY +G+ + ++T N+P++ + + +
Sbjct: 258 NKLDNPAAFLAPFGVLSTTMIICTAFMTALGFFGYTGFGDSIAPTITTNVPKEGLYSTVN 317
Query: 354 KFLVAIAVFFTYCLQMYAPMDIIWTRLKPHIGSGYHN----SAQIXXXXXXXXXXXXLAI 187
FL+ + + MY D+ + + G+ + N + +A+
Sbjct: 318 VFLM-LQSLLGNSIAMYVVYDMFFNGFRRKFGARFPNVPKWLSDKGFRVFWVLVTYLMAV 376
Query: 186 AIPDLGLLIGLVGAIFFSTLGILIPVIVQTVHKW 85
IP L ++I LVG + ++ P + + W
Sbjct: 377 LIPKLEIMIPLVGVTSGALCALIFPPFFEMITFW 410
>AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical
protein Y59H11AR.4 protein.
Length = 457
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/89 (30%), Positives = 50/89 (56%)
Frame = -3
Query: 588 LSTAIFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEV 409
L+T IFA G + + ++M P+ + C +L++ +F+ LY V +FG+ YG+ V
Sbjct: 200 LATIIFAYGGHPCIPTIVHDMKTPQHYFRC-FLLSYIALFL--LYTPVSLFGFWIYGDSV 256
Query: 408 MGSVTINLPQDEILALIAKFLVAIAVFFT 322
S+ ++ D + I+ L+A+ VFF+
Sbjct: 257 SDSIISSIQNDSLRRGIS-ILIAVHVFFS 284
>U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical
protein R02F2.8 protein.
Length = 494
Score = 45.2 bits (102), Expect = 5e-05
Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 3/206 (1%)
Frame = -3
Query: 714 FSLFSNLCLIVTFGITCYYTFHDIPTPSEAKLVVDISRWPLFLS--TAIFAMEGINVVMP 541
FS S+ C ++ + HD P ++ + + F++ T +FA G +
Sbjct: 179 FSAGSSTCAVI---LVVVGLAHDAPVCAQDAPHEEPNLLKAFMAFGTFVFAFGGHATLPT 235
Query: 540 VENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSVTINLPQDEILAL 361
++++M KP F+ + +IF +LY + + GY YG+ V G I Q + +
Sbjct: 236 IQHDMKKPAHFVHS---VVLAIIFCTMLYMCIAVGGYFVYGSTV-GEAIIPSLQIKWIQQ 291
Query: 360 IAKFLVAIAVFFTYCLQMYAPMDIIWTRLK-PHIGSGYHNSAQIXXXXXXXXXXXXLAIA 184
++A+ V T + M P+ + LK PH + + ++
Sbjct: 292 TVNLMIAVHVITTIVIVMSPPIQQVEQLLKVPH----KFGVKRFLVRSILFWFVIFIGLS 347
Query: 183 IPDLGLLIGLVGAIFFSTLGILIPVI 106
IP G ++ L+GA + +++P I
Sbjct: 348 IPHFGPVLDLIGASTMVLMTLILPPI 373
>Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical
protein T20G5.6 protein.
Length = 486
Score = 37.1 bits (82), Expect = 0.014
Identities = 26/114 (22%), Positives = 49/114 (42%)
Frame = -3
Query: 615 VDISRWPLFLSTAIFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIF 436
++I+ P + +F + +E M P +F +L ++ I AV V G+
Sbjct: 262 LNINTLPTIVGMVVFGYTSHIFLPNLEGNMKNPAQF---NVMLKWSHIAAAVFKVVFGML 318
Query: 435 GYLKYGNEVMGSVTINLPQDEILALIAKFLVAIAVFFTYCLQMYAPMDIIWTRL 274
G+L +G ++ +LP L+ LV + +Y L YA + ++ L
Sbjct: 319 GFLTFGELTQEEISNSLPNQSFKILVNLILV-VKALLSYPLPFYAAVQLLKNNL 371
>AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein.
Length = 486
Score = 37.1 bits (82), Expect = 0.014
Identities = 26/114 (22%), Positives = 49/114 (42%)
Frame = -3
Query: 615 VDISRWPLFLSTAIFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIF 436
++I+ P + +F + +E M P +F +L ++ I AV V G+
Sbjct: 262 LNINTLPTIVGMVVFGYTSHIFLPNLEGNMKNPAQF---NVMLKWSHIAAAVFKVVFGML 318
Query: 435 GYLKYGNEVMGSVTINLPQDEILALIAKFLVAIAVFFTYCLQMYAPMDIIWTRL 274
G+L +G ++ +LP L+ LV + +Y L YA + ++ L
Sbjct: 319 GFLTFGELTQEEISNSLPNQSFKILVNLILV-VKALLSYPLPFYAAVQLLKNNL 371
>AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical
protein Y4C6B.2a protein.
Length = 484
Score = 36.7 bits (81), Expect = 0.018
Identities = 33/169 (19%), Positives = 77/169 (45%)
Frame = -3
Query: 612 DISRWPLFLSTAIFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFG 433
+ S+ + T +F+ G ++++M KP F ++ F +IF+ Y V + G
Sbjct: 199 NFSKTLMSFGTIMFSYGGHCAFPTIQHDMKKPHHFSRSI-IIAFIIIFI--FYLPVSMSG 255
Query: 432 YLKYGNEVMGSVTINLPQDEILALIAKFLVAIAVFFTYCLQMYAPMDIIWTRLKPHIGSG 253
Y YG+ + S+ ++ Q+ + I L+++ V + + P++ + + S
Sbjct: 256 YFVYGSSLTDSIIPSI-QNINIQTIVNILISLHVSLALTI-TFNPLNQEFEEILNM--SH 311
Query: 252 YHNSAQIXXXXXXXXXXXXLAIAIPDLGLLIGLVGAIFFSTLGILIPVI 106
+I +A ++P+ G+L+ LVG + + +++P++
Sbjct: 312 DFGWQRIVARALVMLSVVFVAESVPNFGVLLDLVGGSTITMMALVVPIV 360
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 35.9 bits (79), Expect = 0.031
Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 7/170 (4%)
Frame = -3
Query: 594 LFLS--TAIFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKY 421
LFLS T +F++ G + ++++M +P++F L FT++ A +Y V I GYL Y
Sbjct: 247 LFLSMGTLLFSVGGHSAFPTIQHDMKQPKEFTRSV-FLAFTIM--AFMYIPVCIMGYLVY 303
Query: 420 GNEVMGSVTINLPQDEILALIAKFLVAIAVFFTYCLQMYAPMDIIWTRLKPHIGSGYHNS 241
G+ + S+ +P + + + + I V +C+ + I++ L + +H
Sbjct: 304 GDSLRDSI---IPSIQTVWIQQAINIMITV---HCI---LTLTIVFNPLMQEVEELFHVP 354
Query: 240 AQIXXXXXXXXXXXXLAI-----AIPDLGLLIGLVGAIFFSTLGILIPVI 106
+ +A+ ++P G L+ LVG + +++P +
Sbjct: 355 QRFGPKRAIVRTGIMVAVVFVAESVPTFGPLLDLVGGSTLTLTSVIMPCL 404
>AC103567-4|AAL35731.2| 598|Caenorhabditis elegans Hypothetical
protein Y51F10.4 protein.
Length = 598
Score = 34.7 bits (76), Expect = 0.072
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = -3
Query: 492 VLNFTMIFVAVLYGVVGIFGYLK-YGNEVMGSVTINLPQDEIL-ALIAKFLVAIAV 331
V++ ++ A +Y VG+FGY+ Y +E+ G V + P + +L FL++IAV
Sbjct: 271 VVSNSINICAAMYAAVGVFGYVAFYSHELHGDVLVQFPPTIVTQSLKLAFLLSIAV 326
>AF024503-2|AAG24099.1| 331|Caenorhabditis elegans Serpentine
receptor, class j protein5 protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.095
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Frame = -3
Query: 747 YPNTIPQXLVPFSLFSNLCLIVTFGITCYYTFHDIPTPSEAKLVVDISRWPLFLSTAIFA 568
YP+ + + L PF + + + L G + + +P+E + D+ R P FL
Sbjct: 117 YPHQVDKMLQPFGILAMIVLTAGHGASWTWLCEGCLSPNEE--IRDMIR-PAFLEIHHVN 173
Query: 567 MEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGY--LKYGNE--VMGS 400
+ I+++ + + G+++ T +F + V I GY +K NE M S
Sbjct: 174 SDNISLLTGQYRNASDFVVYKSLFGIMSLT-LFSSYCMCVYIILGYKIMKKMNENTNMSS 232
Query: 399 VTINLPQDEILALIAKFLVAI-AVFFTYCLQMYAPMDII 286
++ L + AL+A+ + + A F + YAPM +I
Sbjct: 233 ISATLNRQLFKALVAQTCIPMFASFLPTVIAWYAPMFLI 271
>Z70034-12|CAA93859.1| 235|Caenorhabditis elegans Hypothetical
protein C18E9.10 protein.
Length = 235
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = -3
Query: 156 LVGAIF-FSTLGILIPVIVQTVHKW-NKTSLGSYLL 55
++GAIF FST +LIPVI+ + K+ +LGS LL
Sbjct: 103 IIGAIFCFSTAAVLIPVILVSTRKFAGLNTLGSLLL 138
>Z68318-9|CAA92698.1| 235|Caenorhabditis elegans Hypothetical
protein C18E9.10 protein.
Length = 235
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = -3
Query: 156 LVGAIF-FSTLGILIPVIVQTVHKW-NKTSLGSYLL 55
++GAIF FST +LIPVI+ + K+ +LGS LL
Sbjct: 103 IIGAIFCFSTAAVLIPVILVSTRKFAGLNTLGSLLL 138
>U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical
protein F21D12.3 protein.
Length = 496
Score = 31.5 bits (68), Expect = 0.67
Identities = 21/85 (24%), Positives = 40/85 (47%)
Frame = -3
Query: 576 IFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSV 397
+FA G V ++++M P F + + V +LY + IF ++ YG+ + SV
Sbjct: 244 LFAFSGHYVFPTIQHDMKNPRDFTKS---IFAGFLGVVILYLPLCIFAFVVYGDSMTDSV 300
Query: 396 TINLPQDEILALIAKFLVAIAVFFT 322
++ Q L L+A +++ T
Sbjct: 301 IYSI-QSPSLQLLANLMISFHCIMT 324
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 421 VFKVAEYTDHTIQYCHKYHGEVQYTRTAEEFLRFCHFIFHRHHYINAF 564
+ VA T+ Q C KY + Q TR + + F FH + I AF
Sbjct: 886 IVMVANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAF 933
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 421 VFKVAEYTDHTIQYCHKYHGEVQYTRTAEEFLRFCHFIFHRHHYINAF 564
+ VA T+ Q C KY + Q TR + + F FH + I AF
Sbjct: 886 IVMVANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAF 933
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 421 VFKVAEYTDHTIQYCHKYHGEVQYTRTAEEFLRFCHFIFHRHHYINAF 564
+ VA T+ Q C KY + Q TR + + F FH + I AF
Sbjct: 921 IVMVANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAF 968
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 421 VFKVAEYTDHTIQYCHKYHGEVQYTRTAEEFLRFCHFIFHRHHYINAF 564
+ VA T+ Q C KY + Q TR + + F FH + I AF
Sbjct: 886 IVMVANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAF 933
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 421 VFKVAEYTDHTIQYCHKYHGEVQYTRTAEEFLRFCHFIFHRHHYINAF 564
+ VA T+ Q C KY + Q TR + + F FH + I AF
Sbjct: 886 IVMVANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAF 933
>AC006610-3|AAK85449.1| 264|Caenorhabditis elegans Hypothetical
protein C30F12.3 protein.
Length = 264
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = -3
Query: 531 EMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSVTINL-PQDEILAL-I 358
E P L G+ + FV+ +Y +G+FG K G V+GS I + P+DE
Sbjct: 121 EFLVPYLLLQGAGLAIGLIFFVSFMY--IGLFGDKKVGTTVLGSYGIPVNPRDETAYFNY 178
Query: 357 AKFLVAIAVFFTYCLQMYAPMDII 286
A +L+A + LQ++ M ++
Sbjct: 179 AAWLMAGSFAIVIVLQIWMMMIVV 202
>AL021386-3|CAA16167.1| 330|Caenorhabditis elegans Hypothetical
protein F57E7.3 protein.
Length = 330
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 174 LGLLIGLVGAIFFSTLGILIPVIVQTVHKWNKTSLGSYLLWK 49
L +LI +G + ST G+L + TVHK + ++ +L WK
Sbjct: 270 LDMLIDNIGQLIISTHGLLSTITTLTVHKGYRLAV-LHLFWK 310
>Z99283-5|CAE46680.1| 308|Caenorhabditis elegans Hypothetical
protein Y70C5C.6b protein.
Length = 308
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 73 ARFVPFVYCLYNNWYEYTEGREEDGSHQSN 162
+R P +YC+ +NW+E REE S N
Sbjct: 62 SRQTPNLYCVLSNWHELKMTREEMNSGSLN 91
>Z99283-4|CAB16534.1| 342|Caenorhabditis elegans Hypothetical
protein Y70C5C.6a protein.
Length = 342
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 73 ARFVPFVYCLYNNWYEYTEGREEDGSHQSN 162
+R P +YC+ +NW+E REE S N
Sbjct: 96 SRQTPNLYCVLSNWHELKMTREEMNSGSLN 125
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
F29G6.3b protein.
Length = 1785
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 397 HASHDFIPVFKVAEYTDHTIQYCHKYHGEVQYTRTAEEFLRFCHFIFHR-HHYI 555
H+ H F+P K E DH H HG V T+ A ++ F R HHY+
Sbjct: 1373 HSKHGFLPSIKHQEAQDHA---DHSRHGYVPPTKKAHN----DYWGFERDHHYV 1419
>AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical
protein T23B12.6 protein.
Length = 670
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 526 GKTGEIPRLSWCIELHHDICGSIVWCG 446
G T I RL+ C EL CGS+ +CG
Sbjct: 102 GLTPLIRRLTLCEELSSTSCGSVYFCG 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,746,799
Number of Sequences: 27780
Number of extensions: 428832
Number of successful extensions: 1239
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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