Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i08r
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   1.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = -3

Query: 537 ENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGI-FGYLKYGNEVMGSVTINLPQDEILAL 361
           EN    P   L C       M+F+AVLY  +G+          V G V     Q +    
Sbjct: 198 ENMPEFPLYQLSCILFFLIPMVFIAVLYIRIGLRIQSDSLAENVEGYVHGETKQVQSRKT 257

Query: 360 IAKFLVAIAVFFTYC 316
           I + L A+ + F  C
Sbjct: 258 ITRMLSAVVITFFIC 272


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 103 TNSTQMEQNEPRFVFVVEKRVPTYNLFHR 17
           + S  +E+N    VFVV   VP+  L++R
Sbjct: 550 SGSNTIERNSHESVFVVPDEVPSDVLYNR 578


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 103 TNSTQMEQNEPRFVFVVEKRVPTYNLFHR 17
           + S  +E+N    VFVV   VP+  L++R
Sbjct: 550 SGSNTIERNSHESVFVVPDEVPSDVLYNR 578


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 153 VGAIFFSTLGILIPVIV 103
           +GA+ FS  GILI + V
Sbjct: 658 IGAMSFSATGILITLFV 674


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,312
Number of Sequences: 438
Number of extensions: 5582
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)