Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i08f
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    40   2e-04
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    31   0.093
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    29   0.65 
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    27   1.5  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   2.0  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    27   2.6  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   3.5  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   4.6  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   6.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   6.1  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   6.1  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   8.1  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +3

Query: 240 AVVENDYNPFEHRTLEHKTSTIG------AFFHLLKSSLGSGILAMPMAFKNIGLIPGSI 401
           + V ++  P   R   +K  T G      A   LLKS +G+G+L +P AFK  GL+  S 
Sbjct: 251 STVPSEQEPLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSA 310

Query: 402 GTVVVAVIATHCVHILVSTSRDV 470
             ++V V++  C  +L+ T   V
Sbjct: 311 TLLIVGVLSHICFLLLIQTRMKV 333


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 31.5 bits (68), Expect = 0.093
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 291 KTSTIGAFFHLLKSSLGSGILAMPMAFKNIGLIPGSIGTVVVAVIAT 431
           K     +  +L  + LG+GIL++P AF   GL+ G + T+V +  A+
Sbjct: 18  KAGFFSSVINLANTILGAGILSLPNAFTKTGLLFGCL-TIVFSAFAS 63


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +3

Query: 285 EHKTSTIGAFFHLLKSSLGSGILAMPMAFKNIGLIPGSIGTVVVAVIATHCVHILVSTSR 464
           E   S  G +  +L+S   +GI          G   GSIG  +V  +      ++V+TSR
Sbjct: 610 EFNKSLTGTYLDVLESGAKNGITYQDKYALVTGAGAGSIGAQIVEGLLAGGAKVVVTTSR 669

Query: 465 DVCKATKTPSLSYT 506
              K T+     YT
Sbjct: 670 FSRKVTEFYQSLYT 683


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
 Frame = +3

Query: 141 KSFKMISENFSVSGSNEDMPSKTQSTITL-----DRKDAVVE 251
           + FK+  E++S + SN+D+  K Q++  L     ++K+AVVE
Sbjct: 124 QEFKVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKNAVVE 165


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 220 IVDWVFDGMSSLLPLTLKFSEIILNDFSAVY 128
           IV   FD  +S +P+TLK    I   FS VY
Sbjct: 193 IVTIEFDSFNSNVPVTLKLQRQIFLSFSIVY 223


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = -3

Query: 457 VETRICTQCVAITATTTVPIDPGMRPMFLNAIGIAKIPDPNEDFSRW 317
           V T IC QC+        P+      +  + +G+  I  P + F  W
Sbjct: 342 VATNICDQCLEAIIDFYEPVSRYKFDVMKDRLGVGYISRPGQKFPSW 388


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 171 SVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFEHRTLEHKTSTIGAF 314
           SV  SN     ++ STIT    D +V +  + + H+TL+   ++   F
Sbjct: 453 SVEVSNLSSTPRSNSTITYPDMDPMVASFSSQYSHKTLDRDINSRSYF 500


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 469 TSLDVETRICTQCVAITATTTVPIDPGMRP 380
           T +DV+T I T  + +TA    P  P   P
Sbjct: 194 TQIDVQTNIVTPPITVTAVPDSPNPPAATP 223


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 147 FKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFE-HRTLEHKTSTIGAFFHL 323
           F ++ +N    G   +  SK  +  ++     +       FE +  L+H TSTI  FF L
Sbjct: 460 FYLLHDNSLFKGFKGEKKSKVSTRSSMSPSSILFRKTV--FEKYCLLDHSTSTISLFFGL 517

Query: 324 LKSSLGS 344
           L  +L S
Sbjct: 518 LIFTLKS 524


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 300  TIGAFFHLLKSSLGSGILAMPMAFKNIGLIPGSIGTVVV 416
            T+G FF +L + +   IL++   +K +GL+  S   V++
Sbjct: 915  TLGTFFQILTNIISVTILSLATGWK-LGLVTLSTSPVII 952


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 537 VLF*RQSHKCPCNLKMVFS 481
           ++  +QS K PCN KM+ S
Sbjct: 611 IILCKQSKKSPCNFKMIVS 629


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 153 MISENFSVSGSNED-MPSKTQSTITLDRKDAVVENDYNPFEHRTLEHKTSTIGAF--FHL 323
           ++  +++    NE  +P KT  TI++  K  ++  +Y+P   R L     TI  F  +HL
Sbjct: 347 LLENSYTEFSLNEHPLPKKTLLTISIFEKLRLIRVEYDPSTGRPLRCTNFTIINFVLYHL 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,581
Number of Sequences: 5004
Number of extensions: 49273
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)