Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i08f
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   5.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   6.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   6.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   6.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 454 ETRICTQCVAITATTTVPI 398
           ET+I T CVAI+ + TV +
Sbjct: 734 ETQITTLCVAISLSATVTL 752


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 141 KSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDY 260
           K   +I+E+ S   + + + S TQ  IT  R+  +VEN Y
Sbjct: 85  KEVSIITEDSSRKQTIDPLSSNTQ--ITRKRRVGIVENQY 122


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 454 ETRICTQCVAITATTTVPI 398
           ET+I T CVAI+ + TV +
Sbjct: 824 ETQITTLCVAISLSATVTL 842


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -3

Query: 376 FLNAIGIAKIPDPNEDFSRWKKAPMVDVLCSNVLCS 269
           +   +G  +IP   E++    ++   D  C+ V CS
Sbjct: 330 YFTKVGSGEIPLEEEEWENENESDYQDAFCNIVSCS 365


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 487 VFVALHTSLDVETRICTQCVAITATTTVPIDPGMRPMFLN 368
           +F  +  +L +   +C   V   + +T  + P +R +FLN
Sbjct: 317 LFTMILVTLSIWITVCVLNVHFRSPSTHNMSPWVRQVFLN 356


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 19  VREQNVFKYVKCVIRSLQIRLKPFNF 96
           V ++NV  YV+C+++   +  +  NF
Sbjct: 54  VEDENVQSYVECMMKKFNVVDENGNF 79


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 477 LCTRLWMLKQGYVHS 433
           +C RLW+L  G +++
Sbjct: 129 MCDRLWVLDSGLINN 143


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 474 CTRLWMLKQGYVHS 433
           C RLW+L  G V++
Sbjct: 132 CDRLWVLDSGLVNN 145



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +3

Query: 135 AEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFE 272
           + K  KM++ +F+    N  + +   + + L+ +    +ND  PF+
Sbjct: 382 SNKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFK 427


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 436 VYISLFQHPETCAKRR 483
           VYI L+Q PE   +RR
Sbjct: 235 VYIPLYQQPERHYERR 250


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 474 CTRLWMLKQGYVHS 433
           C RLW+L  G V++
Sbjct: 132 CDRLWVLDSGLVNN 145



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +3

Query: 135 AEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFE 272
           + K  KM++ +F+    N  + +   + + L+ +    +ND  PF+
Sbjct: 382 SNKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFK 427


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 474 CTRLWMLKQGYVHS 433
           C RLW+L  G V++
Sbjct: 132 CDRLWVLDSGLVNN 145



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +3

Query: 135 AEKSFKMISENFSVSGSNEDMPSKTQSTITLDRKDAVVENDYNPFE 272
           + K  KM++ +F+    N  + +   + + L+ +    +ND  PF+
Sbjct: 382 SNKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFK 427


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 5/18 (27%), Positives = 14/18 (77%)
 Frame = -2

Query: 425 YNSHYDSSYRPRNETYVL 372
           YN++Y+++Y+   + Y++
Sbjct: 105 YNNNYNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 5/18 (27%), Positives = 14/18 (77%)
 Frame = -2

Query: 425 YNSHYDSSYRPRNETYVL 372
           YN++Y+++Y+   + Y++
Sbjct: 105 YNNNYNNNYKKLYKNYII 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,969
Number of Sequences: 438
Number of extensions: 3334
Number of successful extensions: 23
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)