Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i07r
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.093
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   2.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.5  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   6.1  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   8.1  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   8.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.1  

>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 31.9 bits (69), Expect = 0.093
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 234 QQKEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVW 413
           Q+    L TV+ +      + D  T  ++ CH + K+F  E S+  L K  +       W
Sbjct: 367 QRYNQKLLTVLSSNAESFNVSDMQTLGLNPCHSLDKSFVSEISQIWLKKHINWQYGKYFW 426

Query: 414 AAKTSL 431
             + SL
Sbjct: 427 LRRVSL 432


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 219 HGVPEQQKEDTLATVVETIVSKLKLMDFN 305
           H V     E+TL+ + E ++S +K+ DFN
Sbjct: 613 HAVKYGPSENTLSLIPELLLSPIKVTDFN 641


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 594 QTSLRHDV--APHPIPERKRSRPESSTWLLR 508
           Q SLR D   +PHPIP    S  ES + +LR
Sbjct: 564 QVSLREDYWKSPHPIPPSSYSFVESPSSILR 594


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 606 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 517
           +H +  S  HD  P P+P    ++P+   W
Sbjct: 224 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 252



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 606 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 517
           +H +  S  HD  P P+P    ++P+   W
Sbjct: 253 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 281


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 456 RRVLFLSP*AKSWQPK 409
           +++LF+ P AKSWQ K
Sbjct: 692 KKILFIIPEAKSWQKK 707


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 231 EQQKEDTLATVVETIVSKLKLMDFNTSNISRC 326
           E Q  DTLA +   I+S +   D++  N+S C
Sbjct: 15  EFQPTDTLAMLSAKILSDILKNDYSPENVSLC 46


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 398 QVHVA*LQKNGPRSFWSKCFTHSVTPGNVRCIKV---HKFQFTDNGF 267
           Q H   + K     +W++ F  +V P +V  I++    KF+  D GF
Sbjct: 39  QTHTTKVIKKSVNPYWNEGFEVTVKPSSVISIRLFDQKKFKKKDQGF 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,548
Number of Sequences: 5004
Number of extensions: 57619
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)