Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i07r
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 32 0.47
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 29 2.5
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 29 2.5
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 29 2.5
AF024494-6|AAB70330.1| 135|Caenorhabditis elegans Hypothetical ... 29 2.5
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 29 3.3
Z67738-1|CAA91545.2| 352|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 7.6
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 28 7.6
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 7.6
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
T01D3.7 protein.
Length = 2882
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +2
Query: 602 CSCQDDYAGRCCSK------EGTNRQGHKGVCSCDQTKTCGC 709
CSC +DY G CSK E + + G+C TKTC C
Sbjct: 906 CSCFEDYGGSDCSKCVGDSCEACDFDCNHGICE-PLTKTCSC 946
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 29.5 bits (63), Expect = 2.5
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 11/178 (6%)
Frame = +3
Query: 111 KTFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQK-----EDTLATVVETI 275
+TF +N L L LI++EN+ +EM ++LL H + + VE I
Sbjct: 59 ETFNINCLDPLGRNALLIAIENENIEM---IELLLDHNIETGDAILYAIGEENVEAVEII 115
Query: 276 VSKLKLMD-FNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRS-KVWAAK--TSLKGSG 443
V L+ MD F++ FTP+ + PI+L N K++ K T
Sbjct: 116 VEHLEKMDKFDSERQGVEITEHSAFTPDIT-PIVLAAHKDNYECIKLFLDKKGTVPHPHD 174
Query: 444 ITLS--EFLTKRRHDIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEVMSDLDALA 611
+ S E R D +R R R T + + D + + E+ +L L+
Sbjct: 175 VRCSCPECYVAREEDSLRLSRSRINAYRALTSPSLICLSARDPILYAFELSWELKRLS 232
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 29.5 bits (63), Expect = 2.5
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 11/178 (6%)
Frame = +3
Query: 111 KTFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQK-----EDTLATVVETI 275
+TF +N L L LI++EN+ +EM ++LL H + + VE I
Sbjct: 59 ETFNINCLDPLGRNALLIAIENENIEM---IELLLDHNIETGDAILYAIGEENVEAVEII 115
Query: 276 VSKLKLMD-FNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRS-KVWAAK--TSLKGSG 443
V L+ MD F++ FTP+ + PI+L N K++ K T
Sbjct: 116 VEHLEKMDKFDSERQGVEITEHSAFTPDIT-PIVLAAHKDNYECIKLFLDKKGTVPHPHD 174
Query: 444 ITLS--EFLTKRRHDIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEVMSDLDALA 611
+ S E R D +R R R T + + D + + E+ +L L+
Sbjct: 175 VRCSCPECYVAREEDSLRLSRSRINAYRALTSPSLICLSARDPILYAFELSWELKRLS 232
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 29.5 bits (63), Expect = 2.5
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 11/178 (6%)
Frame = +3
Query: 111 KTFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQK-----EDTLATVVETI 275
+TF +N L L LI++EN+ +EM ++LL H + + VE I
Sbjct: 59 ETFNINCLDPLGRNALLIAIENENIEM---IELLLDHNIETGDAILYAIGEENVEAVEII 115
Query: 276 VSKLKLMD-FNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRS-KVWAAK--TSLKGSG 443
V L+ MD F++ FTP+ + PI+L N K++ K T
Sbjct: 116 VEHLEKMDKFDSERQGVEITEHSAFTPDIT-PIVLAAHKDNYECIKLFLDKKGTVPHPHD 174
Query: 444 ITLS--EFLTKRRHDIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEVMSDLDALA 611
+ S E R D +R R R T + + D + + E+ +L L+
Sbjct: 175 VRCSCPECYVAREEDSLRLSRSRINAYRALTSPSLICLSARDPILYAFELSWELKRLS 232
>AF024494-6|AAB70330.1| 135|Caenorhabditis elegans Hypothetical
protein C38C3.6 protein.
Length = 135
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 542 AAVPSPAPGYSEALTCRHKNIMTSFSQELGECYS 441
A V AP Y EA+TCR NI +L Y+
Sbjct: 52 APVNEEAPPYGEAVTCRTDNIFAITEPDLSRYYN 85
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 560 GWGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQ 691
G+ C+S++ S C+ +G C + G+K +C +Q
Sbjct: 51 GFTGNDCKSELGSACATSPCRSGATCESVDNSTAGYKCICKWNQ 94
>Z67738-1|CAA91545.2| 352|Caenorhabditis elegans Hypothetical
protein W03G11.2 protein.
Length = 352
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 608 KSIQIRHHFDTMSHPIRSLNVNAAVPSPAPGYSE 507
K I IRH +D ++ +N+ +PSP Y E
Sbjct: 71 KVILIRHRYDNVAEGYIDINITRFIPSPVYFYYE 104
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 530 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSK 643
+G ++ G G +T C +D C C D GR C +
Sbjct: 1841 NGCVKCECGFGADSTECSAD--GHCKCNGDAVGRRCDR 1876
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 530 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSK 643
+G ++ G G +T C +D C C D GR C +
Sbjct: 1841 NGCVKCECGFGADSTECSAD--GHCKCNGDAVGRRCDR 1876
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 563 WGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGH 667
+G ++D C+C D Y+G C + N H
Sbjct: 1302 FGQCMQKTDTFFECNCMDGYSGELCEQRDVNECNH 1336
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 530 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSK 643
+G ++ G G +T C +D C C D GR C +
Sbjct: 1860 NGCVKCECGFGADSTECSAD--GHCKCNGDAVGRRCDR 1895
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,235,764
Number of Sequences: 27780
Number of extensions: 345417
Number of successful extensions: 1093
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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