Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i07f
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    30   0.28 
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    29   0.50 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.6  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   4.6  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   6.1  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   8.1  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.1  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   8.1  

>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 142 IKKQ*MTPRTNTTSCSQPHV-LVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPDQTSLR 318
           ++K  +TP ++  +   P + L+ SQ    L P    P     LP+  S    P Q S  
Sbjct: 234 VRKSAVTPSSDPYNSPPPSIPLLGSQTNLQLAPSFAAPQAHP-LPSHLSQSNVPPQLS-- 290

Query: 319 HDVAPHPIPERKRSRP 366
           H   P P P R  S+P
Sbjct: 291 HSSVPSPAPPRSVSQP 306


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 269 RCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHCFFICYPL 129
           +CC   G +    +G+      K  G E  ++   GV HCF++ YP+
Sbjct: 269 QCC---GWDPLRDEGIAYEKALKAAGNETRLIVYEGVPHCFWVYYPM 312


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 304 QTSLRHDV--APHPIPERKRSRPESSTWLLR 390
           Q SLR D   +PHPIP    S  ES + +LR
Sbjct: 564 QVSLREDYWKSPHPIPPSSYSFVESPSSILR 594


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 292 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 381
           +H +  S  HD  P P+P    ++P+   W
Sbjct: 224 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 252



 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 292 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 381
           +H +  S  HD  P P+P    ++P+   W
Sbjct: 253 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 281


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 442 RRVLFLSP*AKSWQPK 489
           +++LF+ P AKSWQ K
Sbjct: 692 KKILFIIPEAKSWQKK 707


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 529 ILLKLCDMNLRSKVWAAKTSLKGSGITLSEFL 434
           I +KL  + LRS +WA ++++  +G   S  L
Sbjct: 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPIL 276


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 293 SCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQE 180
           SC       CCS+E       KG CS ++T  C  E++
Sbjct: 246 SCCSSKKPSCCSQE------KKGCCSTEKTSCCSQEKK 277


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 289 AKTTMPEDAAQKRAQTGKDTK-ESAAATRPKRVAANKK 179
           AK    ED   K ++TGKD +  +AAA   K+   NKK
Sbjct: 83  AKVVKEEDL--KSSETGKDVETAAAAAAAAKKKKKNKK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,152
Number of Sequences: 5004
Number of extensions: 48458
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)