Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i07f
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    29   2.7  
05_01_0546 - 4769565-4769612,4769873-4770037,4770192-4770200,477...    27   8.2  

>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 226 PLCPCRFVPSFEQ---HLPA*SSWQEHPDQTSLRHDVAPHPIPERKRSRPE 369
           PL P   + S E+   H  A  S ++   +TS RH   P P PE K+  P+
Sbjct: 77  PLKPSLSLSSSEEESTHADAAKSGKKEEAETSERHSSPPPPPPEAKKVTPD 127


>05_01_0546 -
           4769565-4769612,4769873-4770037,4770192-4770200,
           4770412-4770680,4772931-4772994
          Length = 184

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 241 RFVPSFEQHLPA*SSWQEHPDQTSLRHDVAPHPIPERKR 357
           R +  F+Q LP    W+EH    SLR ++       R++
Sbjct: 68  RSINKFKQVLPQRQEWREHAALNSLRREIESKEEKSRRK 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,000,386
Number of Sequences: 37544
Number of extensions: 347338
Number of successful extensions: 1038
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)