Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i07f
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026) 42 4e-04
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 42 5e-04
SB_37565| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 29 2.8
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 29 3.7
SB_39850| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_6319| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 28 4.8
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 4.8
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16) 27 8.5
SB_43700| Best HMM Match : SRCR (HMM E-Value=0) 27 8.5
SB_36069| Best HMM Match : Surf_Ag_VNR (HMM E-Value=6.6) 27 8.5
SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26) 27 8.5
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27) 27 8.5
SB_15856| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27) 27 8.5
SB_4788| Best HMM Match : rve (HMM E-Value=0) 27 8.5
SB_2932| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26) 27 8.5
SB_52367| Best HMM Match : RnaseH (HMM E-Value=0.53) 27 8.5
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_46362| Best HMM Match : rve (HMM E-Value=3e-26) 27 8.5
SB_45058| Best HMM Match : rve (HMM E-Value=2.6e-05) 27 8.5
SB_42299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 27 8.5
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 27 8.5
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)
Length = 301
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -3
Query: 577 RCHRMGKTFTPERSRPILLKLCDMNLRSKVWAAKTSL--KGSGITLSEFLTKRRHDIFMS 404
R HR+G+ R I+ K N+++K+ K SL K + ++E LTK R D +
Sbjct: 194 RSHRVGQA-KGSNPRQIICKFVRHNIKAKILKEKKSLREKKEKLRVNEDLTKGRLDAIKA 252
Query: 403 ARQRFGVTRCWTRDGCVYVQ 344
+ + + WT DG ++V+
Sbjct: 253 INSKLDIYKLWTIDGTIHVR 272
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = -3
Query: 577 RCHRMG--KTFTPERSRPILLKLCDMNLRSKVWAAKTSL--KGSGITLSEFLTKRRHDIF 410
R HR+G K TP R I+ K N+++K+ K SL K + ++E LTK R D
Sbjct: 155 RSHRVGHSKGSTP---RQIICKFVRHNIKAKILKEKKSLREKKDKLRVNEDLTKGRLDAI 211
Query: 409 MSARQRFGVTRCWTRDGCVYVQ 344
+ + + + WT DG ++V+
Sbjct: 212 KAINSKLDIYKLWTIDGTIHVR 233
>SB_37565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -2
Query: 296 CSCQDDYAGRCCSKEGTN--RQGHKGVCSCDQTKTCGCEQEVVFVLGVIHCFFIC 138
C+CQ Y GR C K+ +QG VC + G V+ L F C
Sbjct: 25 CTCQPGYTGRNCEKDIPEMLKQGELNVCDRRDSTVYGTAYRTVYQLKYETKIFCC 79
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 30.7 bits (66), Expect = 0.91
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -2
Query: 371 DSGRLRLRSGIG-WGATSCRSDV*SGCSCQDDYAGRCCSKE-GTNRQGHKGVCSCDQ 207
D G L GI W T +D C C D + G C KE ++ G CSCD+
Sbjct: 141 DPGYLGNDCGIRCWNGTVVVNDGKPECVCSDCFTGVFCDKECDSHGVCRDGKCSCDK 197
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -2
Query: 302 SGC-SCQDDYAGRCCSKEGTNRQGHKGVCS--CDQTKTCGCEQEV 177
S C SCQ Y G C + TN G G CS C G E +V
Sbjct: 406 SSCESCQPRYTGSECERCVTNYIGWSGSCSVYCVHGNATGPEGDV 450
>SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 296 CSCQDDYAGRCCS--KEGTNRQGHKGVCSCDQTKTCG 192
C C Y GRCC G + G VCS KTCG
Sbjct: 100 CYCSSHYRGRCCEIVHGGWSTWGSWSVCS----KTCG 132
>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKRVAANKK 179
E S + + ++ P+DA Q+ +Q S A TRP+R A K
Sbjct: 155 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRRELATTK 200
>SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 323 SCRSDV*SGCSCQDDYAGRCCSKEGTN 243
SC SD CSC +D G+ CSK N
Sbjct: 133 SCDSDRDYECSCNEDKTGKDCSKWKAN 159
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -2
Query: 302 SGCSCQDDY---AGRCCSKEGTNRQGHKGVCSCDQTKTCG-CEQEV 177
SG C DD +G CC + N G C D + G C+ +V
Sbjct: 110 SGGCCDDDVNNSSGGCCDDDVNNNNSSGGCCDDDVNNSSGSCDDDV 155
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = -2
Query: 299 GCSCQDDY---AGRCCSKEGTNRQGHKGVCSCDQTKTCG-CEQEV 177
GC C DD +G CC + N G C D + G C+ +V
Sbjct: 3 GC-CDDDVNNSSGGCCDDDVNNNNSSGGCCDDDVNNSSGSCDDDV 46
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKRVAANK 182
E S + + ++ P+DA Q+ +Q S A TRP+R A +
Sbjct: 276 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRREVAGE 320
>SB_39850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 364 DGCVYVQGSDGVRHRVEVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
+G Y + V E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 147 EGTTYRRNRRQVISTGETNSQVPDVLESPEPDDAQQQPSQVALPPDSSQAITRPRR 202
>SB_6319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 577 RCHRMGKTFTPERSRPILLKLCDMNLRSKVWAAKTSLKGSGITLSEFLTK 428
R HR+G + T SRP++ K R +V +LKG+ I ++E K
Sbjct: 70 RVHRIGNSKTS--SRPLVAKFLRFQDRERVGKNAHALKGTNIGIAEQFPK 117
>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
Length = 1250
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 368 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQT 204
+ R R ++ + +C + SC D G C+ G + GVCSC+QT
Sbjct: 33 TSRTRTKTTVESNGGTCTYALNETKSCGSDNGG--CTGPGASCDEPTGVCSCNQT 85
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 332 GATSCRSDV*SG-CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGC 189
G++S D +G CSC+++ GR CS+ N G G C + C C
Sbjct: 159 GSSSSLCDHVTGQCSCKENVVGRDCSRCKVNSYGF-GPAGCTE---CAC 203
>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKRVAANKK*CSFSVSFTASLFV 137
E S + + ++ P+DA Q+ +Q S A TRP+R ++ + AS F+
Sbjct: 1010 ETNSQVPDVLESPEPDDAQQQPSQVALPPDSSQAITRPRRELVKRQYIPVMSALHASSFL 1069
>SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)
Length = 608
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 555 ETNSQVPDVLESPEPDDAQQQPSQVALPPNSSQAITRPRR 594
>SB_43700| Best HMM Match : SRCR (HMM E-Value=0)
Length = 967
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = -2
Query: 338 GWGATSCRSDV*SGCSCQDDYA----GRCCSKEGTNRQGHKGVCS--CDQTKTCGCEQEV 177
GWGA +C + +G CQ D++ G S EG ++GV CD + + V
Sbjct: 173 GWGAHNCGHNEDAGVICQKDHSVRLVGGSSSLEGRVEIFYQGVWGTVCDDSWDLNDAKVV 232
Query: 176 VFVLGVI 156
+LG +
Sbjct: 233 CGMLGYV 239
>SB_36069| Best HMM Match : Surf_Ag_VNR (HMM E-Value=6.6)
Length = 109
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 29 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 68
>SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26)
Length = 316
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 276 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 315
>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
Length = 1036
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 996 ETNSQVPDVPESPEPDDAQQQPSQVAMPPDSSQAITRPRR 1035
>SB_15856| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)
Length = 514
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 461 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 500
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 522 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 561
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 1072 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 1111
>SB_2932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 173 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 212
>SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26)
Length = 455
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 402 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 441
>SB_52367| Best HMM Match : RnaseH (HMM E-Value=0.53)
Length = 325
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 272 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 311
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +1
Query: 121 DNCSG*QIKKQ*MTPRTNTTSCSQPHVLVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHP 300
+ CS ++KK + ++ T C P WSQ Q LC +F +H P Q++
Sbjct: 904 ETCS--KVKK--LEAKSKTPDC--PEGYCWSQFQVGLCSFKFCRL--KHFPTTEELQKYK 955
Query: 301 DQTSLRHDVAPHPIPERKRSRPESS 375
+ L + A P + + P+++
Sbjct: 956 ETRVLETESADLPSCDEAVAPPQNA 980
>SB_46362| Best HMM Match : rve (HMM E-Value=3e-26)
Length = 455
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 402 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 441
>SB_45058| Best HMM Match : rve (HMM E-Value=2.6e-05)
Length = 272
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 219 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 258
>SB_42299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 186 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 225
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 582 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 621
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 907 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 946
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 316 EVMSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATRPKR 197
E S + + ++ P+DA Q+ +Q S A TRP+R
Sbjct: 1115 ETNSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRR 1154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,360
Number of Sequences: 59808
Number of extensions: 401500
Number of successful extensions: 1421
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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