Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i07f
(582 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S72487-2|AAD14106.1| 157|Homo sapiens orf3 5' of PD-ECGF/TP pro... 33 0.97
AK123032-1|BAC85519.1| 274|Homo sapiens factor. protein. 31 3.9
AK094875-1|BAC04446.1| 149|Homo sapiens protein ( Homo sapiens ... 30 5.2
BC101705-1|AAI01706.1| 1272|Homo sapiens attractin protein. 30 6.8
AL353193-3|CAH70472.1| 1429|Homo sapiens attractin protein. 30 6.8
AL353193-2|CAH70471.1| 1272|Homo sapiens attractin protein. 30 6.8
AL132773-2|CAI22616.1| 1429|Homo sapiens attractin protein. 30 6.8
AL132773-1|CAI22614.1| 1272|Homo sapiens attractin protein. 30 6.8
AL109805-3|CAI21878.1| 1429|Homo sapiens attractin protein. 30 6.8
AL109805-2|CAI21876.1| 1272|Homo sapiens attractin protein. 30 6.8
AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven... 30 6.8
AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven... 30 6.8
AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven... 30 6.8
AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo ... 30 6.8
AF218915-1|AAF72881.1| 1429|Homo sapiens membrane attractin prec... 30 6.8
AF218910-1|AAF72882.1| 1272|Homo sapiens secreted attractin prec... 30 6.8
AF106861-1|AAD03057.1| 1272|Homo sapiens attractin-2 protein. 30 6.8
AB126076-1|BAD20203.1| 165|Homo sapiens keratin associated prot... 30 6.8
BX640786-1|CAE45876.1| 1042|Homo sapiens hypothetical protein pr... 29 9.1
BC116458-1|AAI16459.1| 1042|Homo sapiens integrator complex subu... 29 9.1
BC105094-1|AAI05095.1| 1042|Homo sapiens integrator complex subu... 29 9.1
BC105092-1|AAI05093.1| 1042|Homo sapiens integrator complex subu... 29 9.1
AL513523-3|CAH71416.1| 1042|Homo sapiens integrator complex subu... 29 9.1
AK074979-1|BAC11329.1| 794|Homo sapiens protein ( Homo sapiens ... 29 9.1
AB075859-1|BAB85565.1| 309|Homo sapiens KIAA1979 protein protein. 29 9.1
>S72487-2|AAD14106.1| 157|Homo sapiens orf3 5' of PD-ECGF/TP
protein.
Length = 157
Score = 32.7 bits (71), Expect = 0.97
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +1
Query: 166 RTNTTSCSQPHVLVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPDQTSLRHDVAPHPIP 345
R T + PH WS P P R S E HL E P T R+ V P+P
Sbjct: 58 RPPTPLSALPHSGTWSGPPGPWPPQRRTASREAHLGTPDLNPESPSDTLTRYSVPPYPDL 117
Query: 346 ERKRSRPE--SSTWL 384
+ + P +WL
Sbjct: 118 KSQTPNPRGFDKSWL 132
>AK123032-1|BAC85519.1| 274|Homo sapiens factor. protein.
Length = 274
Score = 30.7 bits (66), Expect = 3.9
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -2
Query: 224 VCSCDQTKTCGCEQEVVFVLGVIHC---FFICYPLQLSVHYCHC 102
VC C C C V+V G +H ++C +++ V C C
Sbjct: 88 VCICVCAHVCTCVHSFVYVCGCVHVGMRVYLCEHVRMCVSLCAC 131
>AK094875-1|BAC04446.1| 149|Homo sapiens protein ( Homo sapiens
cDNA FLJ37556 fis, clone BRCAN2028545. ).
Length = 149
Score = 30.3 bits (65), Expect = 5.2
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = -2
Query: 299 GCSCQDDYAG-RCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLG-VIHCFFICYPLQ 126
GC C + A C + + VC C C C V + V C C ++
Sbjct: 39 GCVCISECACVHACQQAHMHVSTQGRVCMC----VCACVCMTVHICARVCECACACVYVR 94
Query: 125 LSVHYCHCPNLVITDVECS 69
+SVH C C + + C+
Sbjct: 95 MSVHECKCACVYVCKRVCT 113
>BC101705-1|AAI01706.1| 1272|Homo sapiens attractin protein.
Length = 1272
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AL353193-3|CAH70472.1| 1429|Homo sapiens attractin protein.
Length = 1429
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AL353193-2|CAH70471.1| 1272|Homo sapiens attractin protein.
Length = 1272
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AL132773-2|CAI22616.1| 1429|Homo sapiens attractin protein.
Length = 1429
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AL132773-1|CAI22614.1| 1272|Homo sapiens attractin protein.
Length = 1272
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AL109805-3|CAI21878.1| 1429|Homo sapiens attractin protein.
Length = 1429
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AL109805-2|CAI21876.1| 1272|Homo sapiens attractin protein.
Length = 1272
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 29.9 bits (64), Expect = 6.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -2
Query: 296 CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHCFFICYPLQLSV 117
C C +D+ G C + + + GVC TC V ++G HC +C P +
Sbjct: 1387 CECFEDFTGEHCEVDARSGRCANGVCK--NGGTC-----VNLLIGGFHC--VCPPGEYER 1437
Query: 116 HYC 108
YC
Sbjct: 1438 PYC 1440
>AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 29.9 bits (64), Expect = 6.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -2
Query: 296 CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHCFFICYPLQLSV 117
C C +D+ G C + + + GVC TC V ++G HC +C P +
Sbjct: 1387 CECFEDFTGEHCEVDARSGRCANGVCK--NGGTC-----VNLLIGGFHC--VCPPGEYER 1437
Query: 116 HYC 108
YC
Sbjct: 1438 PYC 1440
>AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 29.9 bits (64), Expect = 6.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -2
Query: 296 CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHCFFICYPLQLSV 117
C C +D+ G C + + + GVC TC V ++G HC +C P +
Sbjct: 1387 CECFEDFTGEHCEVDARSGRCANGVCK--NGGTC-----VNLLIGGFHC--VCPPGEYER 1437
Query: 116 HYC 108
YC
Sbjct: 1438 PYC 1440
>AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo 2
protein.
Length = 3014
Score = 29.9 bits (64), Expect = 6.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -2
Query: 296 CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHCFFICYPLQLSV 117
C C +D+ G C + + + GVC TC V ++G HC +C P +
Sbjct: 1387 CECFEDFTGEHCEVDARSGRCANGVCK--NGGTC-----VNLLIGGFHC--VCPPGEYER 1437
Query: 116 HYC 108
YC
Sbjct: 1438 PYC 1440
>AF218915-1|AAF72881.1| 1429|Homo sapiens membrane attractin
precursor protein.
Length = 1429
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AF218910-1|AAF72882.1| 1272|Homo sapiens secreted attractin
precursor protein.
Length = 1272
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AF106861-1|AAD03057.1| 1272|Homo sapiens attractin-2 protein.
Length = 1272
Score = 29.9 bits (64), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 296 CSCQDDYAGRCCS-KEGTNRQG--HKGVCSCDQTKTCGC 189
C C +++ G C T+ G H+G+C+ + C C
Sbjct: 271 CECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSC 309
>AB126076-1|BAD20203.1| 165|Homo sapiens keratin associated protein
protein.
Length = 165
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Frame = -2
Query: 338 GWGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVC---SCDQTKTC 195
G G++ C+S C CQ CC G + C C Q+ C
Sbjct: 106 GCGSSCCQSSCCKPCCCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCC 156
>BX640786-1|CAE45876.1| 1042|Homo sapiens hypothetical protein
protein.
Length = 1042
Score = 29.5 bits (63), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 410 YVCTSTLRSNQVLDSGRLRLRSGIGWGATSCRSDV 306
Y+C SN+VL S L + IGW T+C S+V
Sbjct: 352 YICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNV 386
>BC116458-1|AAI16459.1| 1042|Homo sapiens integrator complex subunit
3 protein.
Length = 1042
Score = 29.5 bits (63), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 410 YVCTSTLRSNQVLDSGRLRLRSGIGWGATSCRSDV 306
Y+C SN+VL S L + IGW T+C S+V
Sbjct: 352 YICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNV 386
>BC105094-1|AAI05095.1| 1042|Homo sapiens integrator complex subunit
3 protein.
Length = 1042
Score = 29.5 bits (63), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 410 YVCTSTLRSNQVLDSGRLRLRSGIGWGATSCRSDV 306
Y+C SN+VL S L + IGW T+C S+V
Sbjct: 352 YICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNV 386
>BC105092-1|AAI05093.1| 1042|Homo sapiens integrator complex subunit
3 protein.
Length = 1042
Score = 29.5 bits (63), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 410 YVCTSTLRSNQVLDSGRLRLRSGIGWGATSCRSDV 306
Y+C SN+VL S L + IGW T+C S+V
Sbjct: 352 YICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNV 386
>AL513523-3|CAH71416.1| 1042|Homo sapiens integrator complex subunit
3 protein.
Length = 1042
Score = 29.5 bits (63), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 410 YVCTSTLRSNQVLDSGRLRLRSGIGWGATSCRSDV 306
Y+C SN+VL S L + IGW T+C S+V
Sbjct: 352 YICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNV 386
>AK074979-1|BAC11329.1| 794|Homo sapiens protein ( Homo sapiens
cDNA FLJ90498 fis, clone NT2RP3003963. ).
Length = 794
Score = 29.5 bits (63), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 410 YVCTSTLRSNQVLDSGRLRLRSGIGWGATSCRSDV 306
Y+C SN+VL S L + IGW T+C S+V
Sbjct: 104 YICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNV 138
>AB075859-1|BAB85565.1| 309|Homo sapiens KIAA1979 protein protein.
Length = 309
Score = 29.5 bits (63), Expect = 9.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 577 RCHRMGKTFTPERSRPILLKLCDMNLRSKVWAAK 476
+C+ GKTF+ E + I+ + + NLRS + AK
Sbjct: 156 KCNECGKTFSKELTHAIIDVILERNLRSAMSVAK 189
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,909,443
Number of Sequences: 237096
Number of extensions: 1884263
Number of successful extensions: 4821
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4813
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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