Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i07f
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   3.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 249 HKPARTQRSLQLRPDQNVWLRTRSSVRSR 163
           H+      S  +RP +NV +    S+R+R
Sbjct: 229 HRNLEATESENVRPRRNVLIERAKSIRAR 257


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 370 TRDGCVYVQGSDGVRHRVEVMSDLDALAKTTMP 272
           T +GC          H + V   +D +A+ T P
Sbjct: 439 TTNGCTAELRKKEPPHPIRVAKTIDVIARITFP 471


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 370 TRDGCVYVQGSDGVRHRVEVMSDLDALAKTTMP 272
           T +GC          H + V   +D +A+ T P
Sbjct: 425 TTNGCTAELRKKEPPHPIRVAKTIDVIARITFP 457


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 370 TRDGCVYVQGSDGVRHRVEVMSDLDALAKTTMP 272
           T +GC          H + V   +D +A+ T P
Sbjct: 459 TTNGCTAELRKKEPPHPIRVAKTIDVIARITFP 491


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 370 TRDGCVYVQGSDGVRHRVEVMSDLDALAKTTMP 272
           T +GC          H + V   +D +A+ T P
Sbjct: 408 TTNGCTAELRKKEPPHPIRVAKTIDVIARITFP 440


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 TNTTSCSQPHVLVWSQLQTPL 231
           + TTS  + HVL  + L +PL
Sbjct: 636 STTTSPDKEHVLAHNDLMSPL 656


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 146 FICYPLQLSVHYCHCPNLVITDV 78
           F+C+ L   + Y H  ++V  D+
Sbjct: 416 FVCFNLMYWIIYLHISDVVADDL 438


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 146 FICYPLQLSVHYCHCPNLVITDV 78
           F+C+ L   + Y H  ++V  D+
Sbjct: 416 FVCFNLMYWIIYLHISDVVADDL 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,218
Number of Sequences: 438
Number of extensions: 3344
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)