Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i02f
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 28 1.2
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 1.5
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos... 27 1.5
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 27 2.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 2.0
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 2.0
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 3.5
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 6.2
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.1
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 25 8.1
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 155 CSSSRSSDRVF*CFLGHRPDPSSLQKQQQKRS 60
C S + +D + C+ P P++LQKQQQ S
Sbjct: 571 CDSEKENDDLE-CYFRTPPKPTTLQKQQQSPS 601
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 86 ENLDPADDPKNIKRPCPN-FDLNCIREYFSRNSQCQLVMGSVP 211
++++ D+ + K PC + F NC++++ + C L VP
Sbjct: 112 DDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 260 NYYSVYLLCSNLKVVDLVQIPLLIDIENFLRNIHE----CSSSRSSDRVF*CFLGHRPDP 93
NY YL + V L IPLL + N+ + ++E CS+ ++R+ C P P
Sbjct: 316 NYRQSYLRIDAIAVHKLKSIPLLSTVSNWFKKMYEHRANCSALIETERLS-CLQATIPLP 374
Query: 92 S 90
S
Sbjct: 375 S 375
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 473 LEFHSQLPMRHFLQLALWLSYC 408
LEF+S L RHF+ L L +C
Sbjct: 199 LEFNSWLVFRHFVDLILMCDFC 220
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 2.0
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Frame = +2
Query: 311 IIEFYIN-----SKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLT 475
+IE Y+N TE + A V ++AS T + + R D L +D
Sbjct: 527 LIELYLNYDCISGNTENIYERAIVTLSRIASQST----SDPPPSFVFRDDQLVIDKPGF- 581
Query: 476 FTAVFPSISDL-QLSNAEVFSYVHEINPKF 562
V+ +++D+ QL+++ + SYVH NP +
Sbjct: 582 ---VYHTLNDIPQLNSSTIGSYVHSHNPPY 608
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 62 IASAVAFGENLDPADDPKNIKRPCPNF 142
I S A+GE L D NI+ P P+F
Sbjct: 23 INSNYAYGEQLQSNDQYNNIQHPAPSF 49
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 281 HHDILRLNYYSVYLLCSNLKVVDLVQIPLLIDIENFLRNIHECSSSRSSDRVF 123
H D + S+ L L V +QIP L + N+H SS+S+D +
Sbjct: 136 HPDYPTIEELSLSLFREKLMAVKNIQIPFLNSLLQSFENLH---SSKSTDHAY 185
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 6.2
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +2
Query: 158 REYFSRNSQCQLVMGSVPDPLPLNYYRVDIPNSNLTVEYHDVKTRGFDTIKIIEFYINSK 337
REY+S++ + + + G P P+ + ++ +L E H V G +IK F+I+
Sbjct: 97 REYYSKSDEIKNICGLPPGPMKVE--QIGHAIDHLVSETHTVDHLG-SSIKASFFHIDDV 153
Query: 338 TEKLVLAAEVQSLKLASP 391
+ + + +Q SP
Sbjct: 154 PLEWISSICMQVQSFFSP 171
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 8.1
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -1
Query: 454 FQCVTSYNWLFGFPIVFEN 398
F V ++ W++G P+ F++
Sbjct: 360 FHSVANFGWIYGMPLFFQS 378
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 129 GLLMFFGSSAGSKFSPKATAEAIKPKTERHRHCS--NHILKKKK 4
G +M F + GSKFS + + +K H++CS H+ K K
Sbjct: 136 GEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCSEIEHLPSKVK 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,634
Number of Sequences: 5004
Number of extensions: 50146
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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