Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i02f
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0287 - 2137425-2137581,2137981-2138117,2138246-2138515,213...    29   2.1  
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465...    27   8.3  

>11_01_0287 -
           2137425-2137581,2137981-2138117,2138246-2138515,
           2138591-2138716,2138790-2138932,2139032-2139117,
           2139574-2139752,2139941-2140210,2140282-2140380
          Length = 488

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +2

Query: 50  VLGLIASAVAFGENLDPADDPKNIKRPCPNFD---LNCIREYFSRNSQCQLVMGSVPD-- 214
           V+ L+ SA       D + D  N+K    + D   +  +REY   ++   +V+ ++PD  
Sbjct: 9   VIKLLTSASLLKAFNDESQDHDNLKVEVHHKDAVVIGSLREYHLDHNMAAVVVENLPDLR 68

Query: 215 PLPLNYYRVDIPNSNLTVEYHDV 283
           P+P N  +  +P+S +     D+
Sbjct: 69  PVPFNNVQKFVPHSMVVALGRDI 91


>06_01_0641 -
           4652380-4653771,4653850-4654521,4654536-4654707,
           4655515-4655690
          Length = 803

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
 Frame = +2

Query: 92  LDPADDPKNIKRPCPNFDLNCIREYFSRNSQCQLVMGSVPDPLPLNYYRVDIPNSNLTVE 271
           L  AD P + +   P+F L    +     S+C +  GS  DP       V I   ++ ++
Sbjct: 67  LQAADGPAH-EGSLPHFPLLLHAQRRKWRSRCSIKCGSHTDPSIFALAGVCIQCKDVLLD 125

Query: 272 YHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQS---LKLASPKTIFK 406
            HDV         I EF   +  EKLV+ A  +     K   P TI K
Sbjct: 126 DHDVAK------SITEFCAVAAIEKLVVGATARGGFRFKADIPTTISK 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,526,259
Number of Sequences: 37544
Number of extensions: 287438
Number of successful extensions: 705
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)