Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i01r
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 198 6e-52
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 101 1e-22
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 29 0.57
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 29 0.57
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 27 3.0
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 4.0
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.3
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 26 7.0
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 9.2
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 783
Score = 198 bits (484), Expect = 6e-52
Identities = 95/250 (38%), Positives = 154/250 (61%), Gaps = 4/250 (1%)
Frame = -3
Query: 777 ENYERXRKRVFKELEDSLVNMYGFYIRIHVKGVHQDLWKAFSTANPNAPLAVFGLLPHEH 598
ENY + + K+ G + + ++ V ++++ ++ P L ++ LL +E+
Sbjct: 524 ENYRNLKNKFLKQPFIGEAKP-GKAVYVELRNVPIEIFEYYN--KPWNLLVLYSLLQYEN 580
Query: 597 KMSLMNVVLKRTGACNEPIKSKERLIFQVGYRRFIVNPIFSQHT----NGSKHKYERFFQ 430
K+++ + EPI+SKE L+ Q+G RRF+V P++S T + + KY R+
Sbjct: 581 KLTVSQFTAMQHSEYEEPIESKEELLLQIGPRRFMVRPLYSDPTASGASNNLQKYHRYLP 640
Query: 429 PASTCVASFFAPIQFSPSTVLCFKEKKNTKLQLVATGVLLSCSPDRLVIKRIVLSGHPYK 250
P +AS +PI F ++ FK+ + L+L ATG ++C + ++ KR VL+GHP+K
Sbjct: 641 PKQAVIASVISPIVFGNVPIIMFKKSSDNSLRLAATGSYVNCDTNSVIAKRAVLTGHPFK 700
Query: 249 VHKKSAVIRFMFFNREDIVYFKPCKLRSKYGRTGHIKEPLGTHGHMKCVFDGQLKSQDTV 70
VHKK IR+MFFN ED+++FKP +L +K GRTG+IKEPLGTHG+ K F+G++ QDTV
Sbjct: 701 VHKKLVTIRYMFFNPEDVIWFKPIQLFTKQGRTGYIKEPLGTHGYFKATFNGKITVQDTV 760
Query: 69 LLNLYKRIFP 40
++LYKR++P
Sbjct: 761 AMSLYKRMYP 770
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 101 bits (242), Expect = 1e-22
Identities = 60/226 (26%), Positives = 117/226 (51%), Gaps = 7/226 (3%)
Frame = -3
Query: 711 GFYIRIHVKGVHQDLWKAFSTANPNAPLAVFGLLPHEHKMSLMNVVLKRTGACNEPIKSK 532
G Y+RI + V + + F + P+ V GLLP+E + L+ V +KR + +K+
Sbjct: 723 GTYVRIVINDVPFEFVEHFDS---RYPVVVGGLLPNEQRYGLVQVRIKRHRWHKKILKTN 779
Query: 531 ERLIFQVGYRRFIVNPIFSQHTNGSKHKYERFFQPASTCVASFFAPIQFSPSTVLCFKEK 352
+ LIF +G+RRF P++S + ++++ ++ C +F+ P +P++ C +
Sbjct: 780 DPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCFGTFYGPF-VAPNSGFCAVQS 838
Query: 351 ------KNTKLQLVATGVLLSCSPDRLVIKRIVLSGHPYKVHKKSAVIRFMFFNREDIVY 190
K ++ ATG +L+ ++K++ L+G PYK+ K +A I+ MF + ++
Sbjct: 839 VANSFAKAGSFRIAATGSVLNIDQSTDIVKKLKLTGVPYKIFKNTAFIKKMFSSPLEVAK 898
Query: 189 FKPCKLRSKYGRTGHIKEPLG-THGHMKCVFDGQLKSQDTVLLNLY 55
F+ +R+ G G +K+ + HGH + F+ ++ D V L +
Sbjct: 899 FEGANIRTVSGIRGQVKKAVDQEHGHFRATFEDKILMSDIVFLRAW 944
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 759 RKRVFKELEDSLVNMYGFYIRIHVKGVHQ-DLWKAFSTA 646
+K+ K LE+ L+N YG ++ KG ++WK + TA
Sbjct: 90 KKQSSKGLEEKLINSYGTHVESLNKGRRLIEIWKYYETA 128
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 744 KELEDSLVNMYGFYIRIHVKGVHQDLWKAFSTANPNAPLAVFG 616
K L DS+ + YI+ G+ + WKA++ + N P +FG
Sbjct: 938 KPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNNPEGIFG 980
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 706 LYKNTCKRCSSRFMESL*YSKSECSVGCFRTFTTRTQNVSDECS 575
L+K CK + F ++ +SK E C+ T +++Q + CS
Sbjct: 525 LFKKVCKMAACPFEDTWGFSKEEEDYLCYNTTPSKSQ-IQCSCS 567
>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 451 MLTAIGVLTEYRIHNEPSITNLEYKSFLALDRFI 552
+L G++ EY I EP + N EYK+F +I
Sbjct: 222 LLNQAGLVLEYSI--EPQVNNSEYKNFAKRTMYI 253
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 106 RFRRATEITRYRTIKLIQTNLPEMVLR 26
+F+ T+ Y+T ++++ NL E+VLR
Sbjct: 1033 KFKHDTQFLSYQTPEILRLNLQEVVLR 1059
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -3
Query: 360 KEKKNTKLQLVATGVLLSCSPDRLVIKRIVLSGHPYKVHKKSAVIRFMFFNREDIVYFKP 181
+E K KL + GV L +PD +++ SG P + H K+ + +E +V P
Sbjct: 1538 EEMKKIKLDV---GVYLPSNPDGVIVGIDRKSGKPLQSHAKAPFMATFKIRKEKLVDADP 1594
Query: 180 CKL 172
+L
Sbjct: 1595 EEL 1597
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +2
Query: 137 SLMCPVRPYFDLSLQGLK*TISSLLKNMNLMTADFL*TLYGCPESTILFITNLSGLHESS 316
SL+ P+ P D+SL K + L+ ++ L+ + + + ILF+ N+ + S
Sbjct: 159 SLLHPLHP-IDVSLS--KEGLPCLVDSLGLLHCSIIHSYQ--VQDHILFVANVERVEHGS 213
Query: 317 TPVATSCSFVFF 352
+P+ +S V++
Sbjct: 214 SPLESSSGLVYY 225
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 699 RIHVKGVHQDLWKAFSTANPNAPL 628
R+ V+G + W F + NP APL
Sbjct: 286 RVPVEGTDEYKWVLFISINPGAPL 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,915
Number of Sequences: 5004
Number of extensions: 72660
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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