Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i01r
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 143 2e-34
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 91 9e-19
06_03_0014 - 15403508-15403648,15404091-15404204,15404253-154043... 30 2.4
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 29 5.5
10_08_0556 - 18739091-18739399,18740126-18740325,18740453-187405... 28 7.2
>11_03_0158 + 10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 143 bits (346), Expect = 2e-34
Identities = 91/280 (32%), Positives = 144/280 (51%), Gaps = 32/280 (11%)
Frame = -3
Query: 777 ENYERXRKRVFKEL----EDSLVN--MYGFYIRIHVKGVHQDLWKAFSTANPNAPLAVFG 616
+N+ R +K V ++ E +L + G ++R+H+K V ++ + P+ V G
Sbjct: 521 DNFTRTQKHVLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVVSG 580
Query: 615 LLPHEHKMSLMNVVLKRTGACNEPIKSKERLIFQVGYRRFIVNPIFS-QHTNGSKHKYER 439
LL HE K+S+++ +K+ + PIKSK+ LIF VG+R+F P+FS + N +KHK ER
Sbjct: 581 LLQHESKISVLHFSIKKHDSYEAPIKSKDSLIFNVGFRQFTARPLFSTDNINCNKHKMER 640
Query: 438 FFQPASTCVASFFAPIQFSPSTVLCFKEKKNTKLQLVATGVLLSCSPDRLVIKRIVLSG- 262
F VAS +API F P ++ K + + + A G L S PDR+++K+IVL+G
Sbjct: 641 FLHHGRFSVASVYAPICFPPLPLIVLKSRDGEQPAIAAVGSLKSVDPDRIILKKIVLTGC 700
Query: 261 ------------------------HPYKVHKKSAVIRFMFFNREDIVYFKPCKLRSKYGR 154
+P +V K AV+R+MF+N ED+ +FK
Sbjct: 701 LPVVCVGELMKRENLGLRTSACALYPQRVSKLKAVVRYMFYNPEDVKWFKA--------- 751
Query: 153 TGHIKEPLGTHGHMKCVFDGQLKSQDTVLLNLYKRIFPKW 34
MKC+F+ ++ DTV ++LYKR +PKW
Sbjct: 752 -----------SAMKCIFNSSVQQHDTVCMSLYKRAYPKW 780
>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 91.1 bits (216), Expect = 9e-19
Identities = 65/252 (25%), Positives = 123/252 (48%), Gaps = 9/252 (3%)
Frame = -3
Query: 735 EDSLVNMYGF----YIRIHVKGVHQDLWKAFSTANPNAPLAVFGLLPHEHKMSLMNVVLK 568
ED+ V + GF YIR+ V GV +L + F +P P+ V G+ E M LK
Sbjct: 729 EDTRVEIEGFRTGSYIRLEVHGVPFELVEYF---DPCHPILVGGIGLGEENTGYMQASLK 785
Query: 567 RTGACNEPIKSKERLIFQVGYRRFIVNPIFSQHTNGSKHKYERFFQPASTCVASFFAPIQ 388
R + +K+K+ +I +G+RRF P+++ +H+ ++ C A F+ P+
Sbjct: 786 RHRWHRKVLKTKDPIIVSIGWRRFQTTPVYAIEDRNGRHRMLKYTPEHMHCFAMFWGPLA 845
Query: 387 FSPSTVLCFKEKKNTKL--QLVATGVLLSCSPDRLVIKRIVLSGHPYKVHKKSAVIRFMF 214
S VL + N+++ ++ ATG + + ++K+I L+G P K+ KK+A+++ MF
Sbjct: 846 PPKSGVLAVQHLSNSQVPFRITATGFVQEFNNTARIMKKIKLTGVPCKIFKKTALVKGMF 905
Query: 213 FNREDIVYFKPCKLRSKYG-RTGHIKEPLG--THGHMKCVFDGQLKSQDTVLLNLYKRIF 43
+ ++ F+ +R+ G + G G +C F+ ++ D V + + +
Sbjct: 906 TSDLEVARFEGATIRTAAKIEPGDMPRRKGESIDGIARCTFEDRILMSDIVFMRAWVNVE 965
Query: 42 PKWSYENCIVTS 7
+Y N + T+
Sbjct: 966 VP-TYCNLVTTA 976
>06_03_0014 -
15403508-15403648,15404091-15404204,15404253-15404339,
15404448-15404577,15404693-15404934,15410335-15410400
Length = 259
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 143 MCPVRPYFDLSLQGLK*TISSLLKNMNLMTAD 238
+CP RPY+ S+Q T+S+ LK M L T +
Sbjct: 69 LCPGRPYWAASMQLSNRTLSTELKPMELSTTE 100
>03_01_0307 +
2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 167 DLSLQGLK*TISSLLKNMNLMTADFL*TLYGCPESTILFITNLSGLHESSTPVATSCSFV 346
+LSL ISS + N M DFL C +T F+ +L G H SS + S
Sbjct: 767 NLSLVSYSSRISSQI--WNEMQTDFLPNFILC-NTTQRFVRSLKGTHHSSQRSSASTGKA 823
Query: 347 FFFSLKH 367
+F+ H
Sbjct: 824 YFYCGSH 830
>10_08_0556 -
18739091-18739399,18740126-18740325,18740453-18740501,
18741151-18741285
Length = 230
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 430 LEESLVLMLTAIGVLTEYRIHNEPSITNL 516
L ++ L+L ++G+ ++ HNE I NL
Sbjct: 82 LLHAIALLLGSVGIYAAFKFHNESGIANL 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,189,720
Number of Sequences: 37544
Number of extensions: 410566
Number of successful extensions: 885
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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