Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i01r
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily as...   253   1e-67
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...   102   2e-22
AC199169-10|ABO33258.1|  475|Caenorhabditis elegans Hypothetical...    29   4.9  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    28   6.5  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    28   6.5  

>U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 151 protein.
          Length = 785

 Score =  253 bits (619), Expect = 1e-67
 Identities = 122/259 (47%), Positives = 176/259 (67%), Gaps = 10/259 (3%)
 Frame = -3

Query: 774  NYERXRKRVFKEL------EDSLVN--MYGFYIRIHVKGVHQDLWKAFSTANPNAPLAVF 619
            NY   +K V  ++       DS+ +    G +  + ++ V   + +A+  A     L +F
Sbjct: 499  NYRNTKKNVMSKIGGNDVDADSVADKKFNGAFASVFIENVPVAVLEAYKDAKN---LVLF 555

Query: 618  GLLPHEHKMSLMNVVLKRTGACNEPIKS--KERLIFQVGYRRFIVNPIFSQHTNGSKHKY 445
             LLPHEHKMS++N+VLK+  +C  PI S   ++ IF VG+R+F  N +FS +T G K K 
Sbjct: 556  QLLPHEHKMSVLNMVLKKHPSCTIPITSDQNQKFIFYVGFRQFEANAVFSSNTPGDKFKL 615

Query: 444  ERFFQPASTCVASFFAPIQFSPSTVLCFKEKKNTKLQLVATGVLLSCSPDRLVIKRIVLS 265
            ERF     T VA+ +API F+P+TVLCF++    + +LVATG +L  +PDR+V+KR VL+
Sbjct: 616  ERFMPTEKTFVATVYAPITFNPATVLCFRQDDKGRQELVATGSILDSNPDRIVLKRTVLA 675

Query: 264  GHPYKVHKKSAVIRFMFFNREDIVYFKPCKLRSKYGRTGHIKEPLGTHGHMKCVFDGQLK 85
            GHPYK+++++ V+R+MFFNREDI +FKP +L +  GR GHIKE +GTHG+MKC FD QL 
Sbjct: 676  GHPYKINRRAVVVRYMFFNREDIEWFKPVELYTPSGRRGHIKEAVGTHGNMKCRFDQQLN 735

Query: 84   SQDTVLLNLYKRIFPKWSY 28
            +QD+V+LNLYKR+FP W+Y
Sbjct: 736  AQDSVMLNLYKRVFPVWNY 754


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
            protein Y61A9LA.10 protein.
          Length = 986

 Score =  102 bits (245), Expect = 2e-22
 Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%)
 Frame = -3

Query: 711  GFYIRIHVKGVHQDLWKAFSTANPNAPLAVFGLLPHEHKMSLMNVVLKRTGACNEPIKSK 532
            G Y+RI +  V  +    F T+   AP  + GLLP E  M ++   +KR       +KS+
Sbjct: 588  GRYVRIEISSVPCEFVDHFDTS---APYIIGGLLPGEQNMGVVQARVKRHRWFERTLKSR 644

Query: 531  ERLIFQVGYRRFIVNPIFSQHTNGSKHKYERFFQPASTCVASFFAPIQFSPSTVLCFKE- 355
            + LI   G+RRF    I+S   +  + ++ ++      C ASFF P+    + +L  +  
Sbjct: 645  DPLIISCGWRRFQTIAIYSVQDHNMRLRFLKYTPEHMHCHASFFGPVCAQNTGLLAIQSI 704

Query: 354  -KKNTKLQLVATGVLLSCSPDRLVIKRIVLSGHPYKVHKKSAVIRFMFFNREDIVYFKPC 178
              K    ++VATG +L       V+K++ L GHP K+ KK+A ++ MF +  ++  F+  
Sbjct: 705  ADKTPGYRIVATGGVLDLDKSTQVVKKLKLIGHPEKIFKKTAFVKGMFNSALEVAKFEGA 764

Query: 177  KLRSKYGRTGHIKEPL-GTHGHMKCVFDGQLKSQDTVLL 64
             +R+  G  G IK+ +    G  +  F+ ++  +D V L
Sbjct: 765  TIRTVAGIRGQIKKAIKAPEGAFRATFEDKILMRDIVFL 803


>AC199169-10|ABO33258.1|  475|Caenorhabditis elegans Hypothetical
           protein F38A1.7 protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
 Frame = -3

Query: 477 SQHT-NGSKHKYERFFQPASTCVASFFAPIQFSPSTVLCFKEKKNTKLQLVATG----VL 313
           ++HT NG  + Y    +    C     AP  F P  +L  ++   T       G     L
Sbjct: 80  AEHTLNGKWYLYGNGAKNVFVCSYDPAAPPTFPPPFILTTRQSTITSANSCQPGGPISFL 139

Query: 312 LSCSPD---RLVIKRIVLSG-HPYKVHKKSAVIRFMFFNREDIVYFKPCKLRSKYGRTGH 145
            + S D   ++V     LS    Y  +   A+ +F     EDIVYF   KL + Y  +  
Sbjct: 140 FAYSNDLDPQVVKDSWDLSNIDDYSGYSVYAIAKFDVLEEEDIVYFLDKKLATTYVHSHL 199

Query: 144 IKEPLGTHG 118
               LG +G
Sbjct: 200 SNSSLGFNG 208


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 552 CRHQCVLILHSSETFCVRVVKVRKQPTEHS 641
           C H  VL+LHSS+T     V VRK  T  S
Sbjct: 90  CLHSLVLLLHSSKTTAFLGVFVRKFGTTRS 119


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 552 CRHQCVLILHSSETFCVRVVKVRKQPTEHS 641
           C H  VL+LHSS+T     V VRK  T  S
Sbjct: 90  CLHSLVLLLHSSKTTAFLGVFVRKFGTTRS 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,390
Number of Sequences: 27780
Number of extensions: 400445
Number of successful extensions: 983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)