Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i01f
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    58   7e-10
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    27   2.7  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   4.8  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   4.8  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   8.4  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 58.4 bits (135), Expect = 7e-10
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
 Frame = +3

Query: 111 HRPGHFKQSNKTHKSRHRSKRGIAAAVKGKVNL-KEIVXXXXXXXXXXXXXHQASQIRKN 287
           H    FK + K  KS+H SK  +    K +V   +                + A QI+ N
Sbjct: 4   HHRSTFK-AKKPFKSKHASKSSLKEKYKNEVEPHRSGPKNIVHTSTKADRRNTAKQIQLN 62

Query: 288 KREEVLATKRALGGTRNPPFLVCVVPLNAQLDVGSALA-ILKTCSDGAVVNESENGIVHI 464
           KR EV    R  GG    P ++ +VPL   +D  + L  +L++    A + + +   +  
Sbjct: 63  KRTEVAMNNRIFGGKNGAPKVITIVPLCNNVDSWNVLTNLLRSIDPEASLPKFDKDSISY 122

Query: 465 G--LPNFKQRFSFICPEVGDDFALLDVLKIADTALYVSSALEE 587
              +  FKQ   F+ P+  + ++L+D  K++D  ++V SA++E
Sbjct: 123 STTIDRFKQNLLFLLPK-REFYSLIDACKVSDYVIFVLSAVQE 164


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = -2

Query: 566 IEGSVSYF*NIKKCKVVTYFRTNKRKPLFEIWQPDVYNSVFRLV 435
           I+G++ +   IK  KV+     ++  P+F+     +   +F +V
Sbjct: 291 IDGAIQHLAGIKDSKVIAAINRDENAPIFQTADVGIVGDLFEIV 334


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 463 MCTIPFSDSFTTAPSEQVFRMASADPTSSCALSGTT 356
           M + P  ++  T P E+   +AS  P+SS + SG +
Sbjct: 1   MASNPLDNNMPTTPVEEKIPVASYSPSSSGSSSGAS 36


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 477 FKQRFSFICPEVGDDFALLDVLK 545
           FKQ   +IC +V D+ +L+++LK
Sbjct: 114 FKQTGIWICKQVADESSLIEMLK 136


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -3

Query: 481 LKFGNPMCTIPFSDSFTTAPSEQVFRMASADP--TSSCALSGTTQTRNGGFLV 329
           + +  P C  P S+     P          DP  +SS A S TT T +   LV
Sbjct: 79  INYNGPTCCEPGSECIYNGPYYSQCIPVDIDPSSSSSSAASSTTSTTSSSSLV 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,284
Number of Sequences: 5004
Number of extensions: 42433
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)