Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i01f
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290...    29   2.1  
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87...    27   8.6  

>10_01_0275 -
           2904601-2904900,2905083-2905233,2905522-2905598,
           2907201-2907390,2908796-2908981,2910521-2910571,
           2911476-2911885,2912252-2912509,2912768-2913070
          Length = 641

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 369 NAQLDVGSALAILKTCSDGAVVNESENGIVHI--GLPNFKQRFSFICPEVGDDFALLDV 539
           NA L  G    +LK+         S+  I HI  G  N ++     CP++GD+ ALL V
Sbjct: 418 NAFLGFGRCCFLLKSVCLANCCKISDEAISHIAQGCKNLRELSIISCPQIGDE-ALLSV 475


>05_01_0128 +
           866817-866859,867789-867874,868142-868231,868337-870214,
           870606-870795,870888-871483
          Length = 960

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 535 SRSAKSSPTSGQINENR-CLKFGNPMCTIPFSDSFTTAPSEQ 413
           SRS KS PTS   N    C K   P+C +P       AP+++
Sbjct: 538 SRS-KSLPTSATNNAKLPCRKQSAPICNLPILKDLLNAPTDE 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,342,695
Number of Sequences: 37544
Number of extensions: 271173
Number of successful extensions: 694
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)