Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i01f
         (597 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126110-1|AAI26111.1|  804|Homo sapiens TSR1, 20S rRNA accumula...   105   1e-22
BC110851-1|AAI10852.1|  804|Homo sapiens TSR1, 20S rRNA accumula...   105   1e-22
AB037822-1|BAA92639.1|  853|Homo sapiens KIAA1401 protein protein.    105   1e-22
BC019090-1|AAH19090.2|  759|Homo sapiens TSR1 protein protein.         79   9e-15
AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens ...    33   1.0  

>BC126110-1|AAI26111.1|  804|Homo sapiens TSR1, 20S rRNA
           accumulation, homolog (S. cerevisiae) protein.
          Length = 804

 Score =  105 bits (252), Expect = 1e-22
 Identities = 63/161 (39%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
 Frame = +3

Query: 111 HRPGHFKQSNKTHKS-RHRSKRGIAAAVKGKVNLKEIVXXXXXXXXXXXXXHQASQIRKN 287
           HRPG  KQ NK HK  RHR +       KG++ LK +              H+ASQ+RK 
Sbjct: 4   HRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQLRKQ 63

Query: 288 KREEVLATKRALGGTRNPPFLVCVVPLNAQLDVGSALAILKTCSDGAV-VNESENGIVHI 464
           K+E VLA KR LGG   PP  V VVPL++++ +  A+ +L+    G V +NE  N    +
Sbjct: 64  KKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQNFM 123

Query: 465 GL-PNFKQRFSFICPEVGDDFALLDVLKIADTALYVSSALE 584
            L P  K R+ F     GD   +LD+ K+ADT L++   LE
Sbjct: 124 LLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLE 164


>BC110851-1|AAI10852.1|  804|Homo sapiens TSR1, 20S rRNA
           accumulation, homolog (S. cerevisiae) protein.
          Length = 804

 Score =  105 bits (252), Expect = 1e-22
 Identities = 63/161 (39%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
 Frame = +3

Query: 111 HRPGHFKQSNKTHKS-RHRSKRGIAAAVKGKVNLKEIVXXXXXXXXXXXXXHQASQIRKN 287
           HRPG  KQ NK HK  RHR +       KG++ LK +              H+ASQ+RK 
Sbjct: 4   HRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQLRKQ 63

Query: 288 KREEVLATKRALGGTRNPPFLVCVVPLNAQLDVGSALAILKTCSDGAV-VNESENGIVHI 464
           K+E VLA KR LGG   PP  V VVPL++++ +  A+ +L+    G V +NE  N    +
Sbjct: 64  KKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQNFM 123

Query: 465 GL-PNFKQRFSFICPEVGDDFALLDVLKIADTALYVSSALE 584
            L P  K R+ F     GD   +LD+ K+ADT L++   LE
Sbjct: 124 LLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLE 164


>AB037822-1|BAA92639.1|  853|Homo sapiens KIAA1401 protein protein.
          Length = 853

 Score =  105 bits (252), Expect = 1e-22
 Identities = 63/161 (39%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
 Frame = +3

Query: 111 HRPGHFKQSNKTHKS-RHRSKRGIAAAVKGKVNLKEIVXXXXXXXXXXXXXHQASQIRKN 287
           HRPG  KQ NK HK  RHR +       KG++ LK +              H+ASQ+RK 
Sbjct: 53  HRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQLRKQ 112

Query: 288 KREEVLATKRALGGTRNPPFLVCVVPLNAQLDVGSALAILKTCSDGAV-VNESENGIVHI 464
           K+E VLA KR LGG   PP  V VVPL++++ +  A+ +L+    G V +NE  N    +
Sbjct: 113 KKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQNFM 172

Query: 465 GL-PNFKQRFSFICPEVGDDFALLDVLKIADTALYVSSALE 584
            L P  K R+ F     GD   +LD+ K+ADT L++   LE
Sbjct: 173 LLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLE 213


>BC019090-1|AAH19090.2|  759|Homo sapiens TSR1 protein protein.
          Length = 759

 Score = 79.4 bits (187), Expect = 9e-15
 Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
 Frame = +3

Query: 261 HQASQIRKNKREEVLATKRALGGTRNPPFLVCVVPLNAQLDVGSALAILKTCSDGAV-VN 437
           H+ASQ+RK K+E VLA KR LGG   PP  V VVPL++++ +  A+ +L+    G V +N
Sbjct: 10  HRASQLRKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLN 69

Query: 438 ESENGIVHIGL-PNFKQRFSFICPEVGDDFALLDVLKIADTALYVSSALE 584
           E  N    + L P  K R+ F     GD   +LD+ K+ADT L++   LE
Sbjct: 70  ELGNTQNFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLE 119


>AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35107 fis, clone PLACE6006871, moderately
           similar to SUPPRESSOR PROTEIN SRP40. ).
          Length = 258

 Score = 32.7 bits (71), Expect = 1.0
 Identities = 22/82 (26%), Positives = 44/82 (53%)
 Frame = -3

Query: 595 STGSSKAELT*RAVSAIFKTSRSAKSSPTSGQINENRCLKFGNPMCTIPFSDSFTTAPSE 416
           S+ SS++ L+   +S+   +S S+ SSP+S   + +      +   + P S S T++PS 
Sbjct: 38  SSSSSRSILSSSILSSSIPSSSSSSSSPSSSHSSSSPSSSHSS---SSPSSSSSTSSPSS 94

Query: 415 QVFRMASADPTSSCALSGTTQT 350
                +S+ P+SS + S ++ +
Sbjct: 95  SSSSSSSSSPSSSNSSSSSSSS 116


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,218,112
Number of Sequences: 237096
Number of extensions: 1384999
Number of successful extensions: 2907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2900
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)