Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11i01f
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily as... 60 2e-09
Z66514-1|CAA91341.3| 198|Caenorhabditis elegans Hypothetical pr... 29 1.9
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 1.9
AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B prot... 29 1.9
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 1.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 1.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 1.9
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 1.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 1.9
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 29 3.3
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 29 3.3
AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical ... 28 5.8
>U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily
assigned gene nameprotein 151 protein.
Length = 785
Score = 59.7 bits (138), Expect = 2e-09
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Frame = +3
Query: 111 HRPGHFKQSNKTHKS--RHRSKRGIAAAVKGKVNLKEIVXXXXXXXXXXXXXHQASQIRK 284
HR G FK+ +K HKS R+K I + +G+ +K++ + +Q+ K
Sbjct: 6 HRAGVFKKPSKPHKSWKGKRTKGEITSENRGREGVKQLTRSAHSTHRTISKDARRNQL-K 64
Query: 285 NKREEVLATKRALGGTRNPPFLVCVVPLNAQLDVGSALAILKTCSDGAVVNESENGIVHI 464
R++ +A T N P LV VV L + L TC D ++ + +
Sbjct: 65 MARDQKMADAMERRRTSNAPCLVTVVSLGVGARPTEFIKKLATC-DETIIQTTSPSTIDF 123
Query: 465 GLPNFKQRFSFICPEVGDDFALLDVLKIADTALYV 569
+P FK R SF+ P+ + +LD ++ +D ++
Sbjct: 124 AIPRFKSRVSFLTPDKDNVDGVLDAIRASDVLCFL 158
>Z66514-1|CAA91341.3| 198|Caenorhabditis elegans Hypothetical
protein K01A11.1 protein.
Length = 198
Score = 29.5 bits (63), Expect = 1.9
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Frame = +3
Query: 126 FKQSNKTHKSRHRSKRGIAAAVKGKVNLKEIVXXXXXXXXXXXXXHQASQIRKNKREEVL 305
++ S T KS S +A+ ++ + ++ + H + R+ K EE+
Sbjct: 45 YEMSMVTQKSDDDSD--LASRIRSEKSIPSTLTTPPTVTYHRRHHHHHKKNRREKNEELC 102
Query: 306 ATKRALGGTR------NPPFLVCVVPLNAQLDVGSALA-ILKTCSDGAVVNESENGIVHI 464
++R + +PPF+V V LN+Q +GS L+ +TC G + + VH+
Sbjct: 103 ESQRKIVELNTQSHEFDPPFVVEVRCLNSQSPIGSLLSGQEQTCFKGMLRCVQQYADVHV 162
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 484 CLKFGNPMCTIPF-SDSFTTAPSEQVFRMASADPTSSCALSGTTQTRNGGF 335
CL FGNP +I + D E++ A+AD T LS T G F
Sbjct: 5946 CLPFGNPFPSIKWLKDGLELFSDEKIKMEAAADGTQRLILSDVTFLSEGYF 5996
>AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B
protein.
Length = 750
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 484 CLKFGNPMCTIPF-SDSFTTAPSEQVFRMASADPTSSCALSGTTQTRNGGF 335
CL FGNP +I + D E++ A+AD T LS T G F
Sbjct: 25 CLPFGNPFPSIKWLKDGLELFSDEKIKMEAAADGTQRLILSDVTFLSEGYF 75
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 484 CLKFGNPMCTIPF-SDSFTTAPSEQVFRMASADPTSSCALSGTTQTRNGGF 335
CL FGNP +I + D E++ A+AD T LS T G F
Sbjct: 5306 CLPFGNPFPSIKWLKDGLELFSDEKIKMEAAADGTQRLILSDVTFLSEGYF 5356
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 484 CLKFGNPMCTIPF-SDSFTTAPSEQVFRMASADPTSSCALSGTTQTRNGGF 335
CL FGNP +I + D E++ A+AD T LS T G F
Sbjct: 5946 CLPFGNPFPSIKWLKDGLELFSDEKIKMEAAADGTQRLILSDVTFLSEGYF 5996
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 484 CLKFGNPMCTIPF-SDSFTTAPSEQVFRMASADPTSSCALSGTTQTRNGGF 335
CL FGNP +I + D E++ A+AD T LS T G F
Sbjct: 5946 CLPFGNPFPSIKWLKDGLELFSDEKIKMEAAADGTQRLILSDVTFLSEGYF 5996
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 484 CLKFGNPMCTIPF-SDSFTTAPSEQVFRMASADPTSSCALSGTTQTRNGGF 335
CL FGNP +I + D E++ A+AD T LS T G F
Sbjct: 5306 CLPFGNPFPSIKWLKDGLELFSDEKIKMEAAADGTQRLILSDVTFLSEGYF 5356
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 484 CLKFGNPMCTIPF-SDSFTTAPSEQVFRMASADPTSSCALSGTTQTRNGGF 335
CL FGNP +I + D E++ A+AD T LS T G F
Sbjct: 5946 CLPFGNPFPSIKWLKDGLELFSDEKIKMEAAADGTQRLILSDVTFLSEGYF 5996
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = -3
Query: 514 PTSGQINENRCLKFGNPMCTIPFSDSFTTAPS---EQVFRMASADPTSSCALSGTTQ--- 353
P+S + N +P T + + T PS + RMAS+ P+SS + SGT+
Sbjct: 1374 PSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAA 1433
Query: 352 TRNGGFLVPPKARFVA 305
T +G +V K++ +A
Sbjct: 1434 TSSGISIVKQKSQSIA 1449
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = -3
Query: 514 PTSGQINENRCLKFGNPMCTIPFSDSFTTAPS---EQVFRMASADPTSSCALSGTTQ--- 353
P+S + N +P T + + T PS + RMAS+ P+SS + SGT+
Sbjct: 1374 PSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAA 1433
Query: 352 TRNGGFLVPPKARFVA 305
T +G +V K++ +A
Sbjct: 1434 TSSGISIVKQKSQSIA 1449
>AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical
protein T27B7.2 protein.
Length = 476
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -2
Query: 125 MAGTMWLLHFDCFSK----LKCKLADFNLNLF 42
MAG W+ HFD F K L+ KLA N+F
Sbjct: 218 MAGVKWVSHFDHFQKLDQDLQMKLAQSIWNIF 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,678,280
Number of Sequences: 27780
Number of extensions: 245934
Number of successful extensions: 682
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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