Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11i01f
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.56 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 220 FDVIVVSLEKTIAVIRLHKFAKIKGKR 300
           F+++ +S+++ IAV +  K+AK K  R
Sbjct: 275 FNLVAISIDRYIAVTQPIKYAKHKNNR 301



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 430 TAPSEQVFRMASADPTSSCALSGTTQTRNGGFLVPPKARFVARTSSLL 287
           +APS      +S+ P    A +G    RNGG     + + +  T SLL
Sbjct: 519 SAPSSST---SSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLL 563


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 503 TNKRKPLFEIWQPDVYNSVFRLVYDSPIRTGL 408
           TN+R P F  +  +V++ + +   + P +T L
Sbjct: 274 TNRRNPWFSEYWEEVFDCLLKKERNGPTQTTL 305


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 503 TNKRKPLFEIWQPDVYNSVFRLVYDSPIRTGL 408
           TN+R P F  +  +V++ + +   + P +T L
Sbjct: 364 TNRRNPWFSEYWEEVFDCLLKKERNGPTQTTL 395


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 481 LKFGNPMCTIPFSDSFTTAPSEQVFRMASADPTSSCALSGTTQTRNGG 338
           L +   +  + F   +T      V+R+ S+     CA+S   + RN G
Sbjct: 364 LTYNGTVHDVEFPGXYTMVIGSGVYRIGSSVEFDWCAVSCLRELRNLG 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,223
Number of Sequences: 438
Number of extensions: 2747
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)