Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h24r
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   5.6  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   9.7  

>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -1

Query: 273 F*YCLVFGTNILCI*SAMTHRAQALRVAPARALHQQSVNCLAVGYSYDFT 124
           F +   F   IL    A +H + +   + + A H  S+N  +    YDF+
Sbjct: 6   FNFTTAFLFTILAFAQARSHSSSSSSTSKSSASHHSSINSTSATSVYDFS 55


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 235 YIVSNDAPCASATGGPRARTSPAVRKL 155
           ++V ND+PC S T GP+      +R L
Sbjct: 396 FVVRNDSPCGS-TIGPKLAAMTGMRTL 421


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 132 HTSIRRQGSLRTAGEVRARGPPVALAHGASLLTIYKECLSQKLDNIKNQ 278
           H ++RR  SL +   +++  PPV      S+L + K+  +      +NQ
Sbjct: 263 HANLRRSVSLGSKDYLKSSHPPVHKTLSQSVLVLSKDGNASSSGGTENQ 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,017
Number of Sequences: 5004
Number of extensions: 27625
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)