Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h24r
         (549 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001849-1|AAN71610.1|  428|Drosophila melanogaster RH57626p pro...    29   4.1  
AY118431-1|AAM48460.1|  424|Drosophila melanogaster RH39904p pro...    29   4.1  
AE014134-1691|AAF52809.1|  424|Drosophila melanogaster CG4017-PA...    29   4.1  

>BT001849-1|AAN71610.1|  428|Drosophila melanogaster RH57626p
           protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 253 WDKHSLYIVSNDAPCASATGGPRARTSPAVRKL 155
           WD H   + ++  PC+ +  GP+A + P V+ L
Sbjct: 257 WDFHWREVGASSDPCSESYAGPKAFSEPEVQTL 289


>AY118431-1|AAM48460.1|  424|Drosophila melanogaster RH39904p
           protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 253 WDKHSLYIVSNDAPCASATGGPRARTSPAVRKL 155
           WD H   + ++  PC+ +  GP+A + P V+ L
Sbjct: 253 WDFHWREVGASSDPCSESYAGPKAFSEPEVQTL 285


>AE014134-1691|AAF52809.1|  424|Drosophila melanogaster CG4017-PA
           protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 253 WDKHSLYIVSNDAPCASATGGPRARTSPAVRKL 155
           WD H   + ++  PC+ +  GP+A + P V+ L
Sbjct: 253 WDFHWREVGASSDPCSESYAGPKAFSEPEVQTL 285


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,248
Number of Sequences: 53049
Number of extensions: 319135
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)