Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h24f
(646 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 64 2e-10
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 59 4e-09
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 59 4e-09
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 59 4e-09
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 56 3e-08
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 56 3e-08
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 56 4e-08
S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotei... 56 5e-08
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 56 5e-08
AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein ... 56 5e-08
AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 56 5e-08
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 54 2e-07
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 54 2e-07
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 54 2e-07
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 54 2e-07
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 54 2e-07
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 52 7e-07
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 51 2e-06
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 50 3e-06
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 50 4e-06
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 50 4e-06
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 50 4e-06
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 50 4e-06
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 50 4e-06
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 50 4e-06
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 50 4e-06
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 47 2e-05
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 46 4e-05
AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p pro... 44 1e-04
AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p pro... 42 7e-04
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 42 7e-04
AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p pro... 32 0.58
BT023836-1|AAZ86757.1| 1199|Drosophila melanogaster LD18215p pro... 29 5.4
BT011109-1|AAR82776.1| 1190|Drosophila melanogaster LD47325p pro... 29 5.4
AY119169-1|AAM51029.1| 918|Drosophila melanogaster RH46576p pro... 29 5.4
AE014298-1936|AAF48298.1| 918|Drosophila melanogaster CG12176-P... 29 5.4
AE013599-1009|AAF58849.1| 1199|Drosophila melanogaster CG1371-PA... 29 5.4
AE013599-747|AAF59019.2| 323|Drosophila melanogaster CG8235-PA ... 29 7.1
BT003500-1|AAO39504.1| 1169|Drosophila melanogaster RE45036p pro... 28 9.4
AE013599-158|AAF57274.2| 1169|Drosophila melanogaster CG11212-PA... 28 9.4
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 64.1 bits (149), Expect = 2e-10
Identities = 37/95 (38%), Positives = 56/95 (58%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
LLAI + K FRH L R F I +DH+PL++ + + N ++R +S+F DI++
Sbjct: 552 LLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVK--LSEFDFDIKY 609
Query: 182 ISGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDN 286
I GK+N VAD LSRI ++ + EQ + + DN
Sbjct: 610 IKGKENCVADALSRI-KLEETYLSEQTQHSAEEDN 643
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 59.3 bits (137), Expect = 4e-09
Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 23/210 (10%)
Frame = +2
Query: 5 LAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRHI 184
LA+ ++VK+FRH L R+F ++TD L + K + +PR R ++ F +I++
Sbjct: 790 LAVVKAVKHFRHYLIGREFVVYTDCNSLKAS--RTKIDLTPRVHRWWAYLQSFNFEIQYR 847
Query: 185 SGKDNVVADTLSR----------IEEIAQP-IDLEQVAKA-----QQGDNEIKDLLE--D 310
GK D LSR I +I + ++L +++ Q+ D EI +++ +
Sbjct: 848 EGKRMAHVDFLSRNPLSPEHILSINKIPEKRVNLSEISSTWLLAEQRLDLEIIEIVNKLE 907
Query: 311 NSSLCLRKVKLPGSRT-ELYCDV---GETVQRPFIPKQFRRQVFQSLH-SLSHPGANATA 475
+ L K R LY V G T P +P+ F+ V +H S+ H G T
Sbjct: 908 SDELAENLAKTYDLRKGVLYRKVQRRGRTSYLPVVPRAFKWSVINQVHESIMHLGWQKTL 967
Query: 476 KLVSERYVWPGVRKDCREWVRTCLACQRSK 565
V + Y + + K R++V C+ C+ K
Sbjct: 968 DKVYQYYWFAKMNKYVRKFVSNCITCRSVK 997
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 59.3 bits (137), Expect = 4e-09
Identities = 34/96 (35%), Positives = 54/96 (56%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
LLAI + K FRH L R F I +DH+PL + ++ N +++ ++++ DI++
Sbjct: 499 LLAIVWATKTFRHYLLGRHFEIASDHQPLCWLHKMKEPNAKLTRWKFR--LAEYDFDIKY 556
Query: 182 ISGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDNE 289
+ GK+N VAD LSRI I + E + Q DN+
Sbjct: 557 VKGKENHVADALSRI-TIEEAFFTEATQHSAQEDNQ 591
Score = 39.9 bits (89), Expect = 0.003
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 410 QFRRQVFQSLHSLSHPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSK 565
+F+ + QS L HPG T KL SE Y +P + + + C C +K
Sbjct: 696 EFKELILQSHEKLLHPGIQKTKKLFSENYFFPNSQLQIQNIINECQVCNLAK 747
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/100 (36%), Positives = 59/100 (59%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
LLAIY S K+F++ + R F I TDH+PL + + ++ N ++++ +++F DI
Sbjct: 477 LLAIYWSTKFFKYYIYGRKFIIKTDHRPLVWLNNLKEPNLKLQRWKVQ--LNEFDFDITF 534
Query: 182 ISGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDNEIKDL 301
I GK+N +AD LSRI + + E+ K Q + EI +L
Sbjct: 535 IKGKENALADGLSRIVKAS----TEEYDKNAQTNIEINNL 570
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 449 SHPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTR 574
+H G N + E+Y +P ++K + ++ C C +K R
Sbjct: 742 NHRGINEIFISIREKYYYPKMQKFIQNYINNCKICNLAKYDR 783
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 56.4 bits (130), Expect = 3e-08
Identities = 29/75 (38%), Positives = 45/75 (60%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
L AI+ ++ +F+ + R FT+ TDH+PLTY F + + R LD + ++ + +
Sbjct: 557 LSAIHWAINHFKPYIYGRHFTVKTDHRPLTYLFSMVNPSSKLTRMR-LD-LEEYEFTVEY 614
Query: 182 ISGKDNVVADTLSRI 226
+ GKDN VAD LSRI
Sbjct: 615 LKGKDNYVADALSRI 629
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 56.4 bits (130), Expect = 3e-08
Identities = 35/104 (33%), Positives = 57/104 (54%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
LLAI + KYFR L R F + +DHKPL + + ++ N ++++ +++F I++
Sbjct: 625 LLAIVWATKYFRSYLFGRPFEVLSDHKPLVWLNNIKEPNMKLQRWKIK--LNEFDYKIKY 682
Query: 182 ISGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDNEIKDLLEDN 313
+ GK+N VAD LSR + I++ A D I +EDN
Sbjct: 683 LPGKENHVADALSRTK-----IEVMVGEVANSADATIHSAIEDN 721
Score = 32.7 bits (71), Expect = 0.44
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 410 QFRRQVFQSLHSLSHPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRH 577
+F+ + + L HPG T L E Y +P +K + + C C +K T H
Sbjct: 829 EFKDLILKKHKELLHPGIEKTINLFKEEYYYPDSQKLIQTIINECQICYLAK-TEH 883
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 56.0 bits (129), Expect = 4e-08
Identities = 39/95 (41%), Positives = 53/95 (55%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
LLAI + K FRH L R I +DH+PL + H KE S + R +S++ DI++
Sbjct: 514 LLAIVWATKTFRHYLLGRHCEIASDHQPLCW-LHKLKEPNS-KLTRWKIRLSEYDFDIKY 571
Query: 182 ISGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDN 286
I GK+N VAD LSRI +I Q E + + DN
Sbjct: 572 IKGKENHVADALSRI-KIEQAFFGESTQHSAEEDN 605
Score = 35.5 bits (78), Expect = 0.062
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 413 FRRQVFQSLHSLSHPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRH 577
F+ + + L HPG T KL SE Y +P + + + C C +K T H
Sbjct: 713 FKELILNTHEKLLHPGIQKTVKLFSENYYFPNSQLLIQNIINECQVCNLAK-TEH 766
>S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotein
protein.
Length = 624
Score = 55.6 bits (128), Expect = 5e-08
Identities = 29/75 (38%), Positives = 45/75 (60%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
L AI+ ++ +FR + R F + +DH+PL+Y F R + + R LD + +F + +
Sbjct: 50 LAAIHWAINHFRPYVYGRHFLVQSDHRPLSYLFSMRNPSSKLTRMR-LD-LEEFEFTVEY 107
Query: 182 ISGKDNVVADTLSRI 226
+ GKDN VAD LSRI
Sbjct: 108 LKGKDNHVADALSRI 122
Score = 45.6 bits (103), Expect = 6e-05
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 452 HPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSPI 592
H G + T + + WP + K E+V TCL CQ+SK T+H +P+
Sbjct: 296 HSGISRTLRKMKNCCCWPRMTKAISEYVETCLKCQQSKTTKHTKTPL 342
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 55.6 bits (128), Expect = 5e-08
Identities = 30/76 (39%), Positives = 46/76 (60%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
+LAI +V+YFR L R FTI TDHKPLT+ + ++ N ++R + ++ ++ +
Sbjct: 551 MLAIIWAVQYFRPYLFGRRFTIITDHKPLTWLMNFKQPNSKIVRWRLQ--LQEYDFEVVY 608
Query: 182 ISGKDNVVADTLSRIE 229
G NV+AD LSR E
Sbjct: 609 KKGSQNVIADALSRPE 624
>AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein
protein.
Length = 826
Score = 55.6 bits (128), Expect = 5e-08
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
L AI+ ++ +FR + + FTI TDH+PLTY F N S + R + ++ + +
Sbjct: 252 LAAIHWAITHFRPYIYGKHFTIKTDHRPLTYLF--SMTNPSSKLTRMRLELEEYDFTVEY 309
Query: 182 ISGKDNVVADTLSRI 226
+ GKDN VAD LSRI
Sbjct: 310 LRGKDNFVADALSRI 324
Score = 41.9 bits (94), Expect = 7e-04
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 452 HPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSPI 592
H G T + Y W + + +E++R C CQ SK T H +P+
Sbjct: 498 HTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPL 544
>AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 826
Score = 55.6 bits (128), Expect = 5e-08
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
L AI+ ++ +FR + + FTI TDH+PLTY F N S + R + ++ + +
Sbjct: 252 LAAIHWAITHFRPYIYGKHFTIKTDHRPLTYLF--SMTNPSSKLTRMRLELEEYDFTVEY 309
Query: 182 ISGKDNVVADTLSRI 226
+ GKDN VAD LSRI
Sbjct: 310 LRGKDNFVADALSRI 324
Score = 41.9 bits (94), Expect = 7e-04
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 452 HPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSPI 592
H G T + Y W + + +E++R C CQ SK T H +P+
Sbjct: 498 HTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPL 544
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 54.0 bits (124), Expect = 2e-07
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
+LAI +VKYFR + FTI TDHKPL + + ++ N ++R L + ++ +I H
Sbjct: 664 MLAIIWAVKYFRPYIYGVKFTIVTDHKPLIWLMNFKEPNSKIIRWR-LQLM-EYNFEIIH 721
Query: 182 ISGKDNVVADTLSRIE 229
G NV+AD LSR +
Sbjct: 722 KKGSQNVIADALSRAD 737
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
L AI+ ++ +FR + + FT+ TDH+PLTY F N S + R + ++ + +
Sbjct: 663 LAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLF--SMVNPSSKLTRIRLELEEYNFTVEY 720
Query: 182 ISGKDNVVADTLSRI 226
+ GKDN VAD LSRI
Sbjct: 721 LKGKDNHVADALSRI 735
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 452 HPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSPI 592
H G T V Y W + K +E+VR C CQ++K T+H +P+
Sbjct: 909 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPM 955
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 53.6 bits (123), Expect = 2e-07
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
LLAI + K FRH L R F I +DH+PL + H+ KE + + R +S++ I +
Sbjct: 551 LLAIVWATKTFRHYLLGRQFLIASDHQPLRW-LHNLKEPGAKLE-RWRVRLSEYQFKIDY 608
Query: 182 ISGKDNVVADTLSRIE 229
I GK+N VAD LSRI+
Sbjct: 609 IKGKENSVADALSRIK 624
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
L AI+ ++ +FR + + FT+ TDH+PLTY F N S + R + ++ + +
Sbjct: 426 LAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLF--SMVNPSSKLTRIRLELEEYNFTVEY 483
Query: 182 ISGKDNVVADTLSRI 226
+ GKDN VAD LSRI
Sbjct: 484 LKGKDNHVADALSRI 498
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 452 HPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSPI 592
H G T V Y W + K +E+VR C CQ++K T+H +P+
Sbjct: 672 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPM 718
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 53.6 bits (123), Expect = 2e-07
Identities = 28/76 (36%), Positives = 47/76 (61%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
LLAI + KYFR L R F I +DH+PL + ++ N ++++ +++F I++
Sbjct: 540 LLAIVWATKYFRSYLFGRKFEIHSDHRPLVWLDSIKEPNMKLQRWKIK--LNEFDYHIKY 597
Query: 182 ISGKDNVVADTLSRIE 229
+ GK+N VAD LSR++
Sbjct: 598 LPGKENHVADALSRVK 613
Score = 35.9 bits (79), Expect = 0.047
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 410 QFRRQVFQSLHSLSHPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRH 577
+F+ + +S L HPG L E+Y +P +K + + C C SK T H
Sbjct: 749 EFKEIIIKSHRELLHPGIEKQTNLFKEKYYYPDYQKLIQNIINECEVCNISK-TEH 803
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 52.0 bits (119), Expect = 7e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRH 181
L AI+ ++ +FR + + F + +DH+PL+Y F S K S LD + ++ + +
Sbjct: 418 LTAIHWAINHFRPYIYGKHFMVKSDHRPLSYLF-SMKNPSSKLTRMRLD-LEEYDFTVEY 475
Query: 182 ISGKDNVVADTLSRI 226
+ GKDN +AD LSRI
Sbjct: 476 LKGKDNHIADALSRI 490
Score = 47.6 bits (108), Expect = 1e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 452 HPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSPI 592
H G + T + Y WP + K ++V+TCL CQ++K+T H +P+
Sbjct: 667 HTGISRTQSKIKRFYYWPQMTKTISKYVKTCLKCQQAKITTHTKTPL 713
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEA-RDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
LLAI ++K R+ L ++ IFTDH+PLTYA R N ++++ F+ + I
Sbjct: 544 LLAIVWALKSLRNYLYGVKNLNIFTDHQPLTYAVSDRNPNAKIKRWK--AFIDEHNAKIF 601
Query: 179 HISGKDNVVADTLSR 223
+ GK+ VAD LSR
Sbjct: 602 YKPGKETYVADALSR 616
Score = 37.9 bits (84), Expect = 0.012
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 416 RRQVFQSLHSLSHPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRH 577
+R++ H+ +H A K + + Y +P + + +V CL CQ++K RH
Sbjct: 744 QREIVSLEHNRAHRAAQENVKQILQYYFFPKMSQIAATFVSNCLVCQKAKYDRH 797
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 50.0 bits (114), Expect = 3e-06
Identities = 54/191 (28%), Positives = 79/191 (41%), Gaps = 8/191 (4%)
Frame = +2
Query: 5 LAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRHI 184
LAI S++ FR L R F I TD L S+KE +PR R + +I H
Sbjct: 1062 LAIVYSLRRFRVYLHWRTFKIVTDCNSLILTL-SKKE-LNPRIARWALEFQGYDFEIVHR 1119
Query: 185 SGKDNVVADTLSRIEEIA--QPIDLEQVAKAQQGDN----EIKDLLEDNSSLCLRKVKLP 346
+G D LSR I Q E QG + EI+ LLE+ + KL
Sbjct: 1120 AGSRMQHVDALSRCTNIMVIQTNSFEDNLVICQGKDTKLKEIRQLLENTEN------KLY 1173
Query: 347 GSRTEL-YCDVGETVQRPFIPKQFRRQVFQSLHS-LSHPGANATAKLVSERYVWPGVRKD 520
R + Y E ++P + QV H+ L H G + + + + Y +P +++
Sbjct: 1174 EMRNGIVYKKTNENRLLFYVPIEMEEQVLYKYHNELGHVGRDKMIEAIMKNYWFPNLKQK 1233
Query: 521 CREWVRTCLAC 553
C + CL C
Sbjct: 1234 CSTHISNCLKC 1244
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 49.6 bits (113), Expect = 4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLE-ARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
LLAI ++ ++ L +R+ IFTDH+PLT+A R N ++++ ++ Q +
Sbjct: 518 LLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVF 575
Query: 179 HISGKDNVVADTLSR 223
+ GK+N VAD LSR
Sbjct: 576 YKPGKENFVADALSR 590
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 49.6 bits (113), Expect = 4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLE-ARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
LLAI ++ ++ L +R+ IFTDH+PLT+A R N ++++ ++ Q +
Sbjct: 513 LLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVF 570
Query: 179 HISGKDNVVADTLSR 223
+ GK+N VAD LSR
Sbjct: 571 YKPGKENFVADALSR 585
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 49.6 bits (113), Expect = 4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLE-ARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
LLAI ++ ++ L +R+ IFTDH+PLT+A R N ++++ ++ Q +
Sbjct: 548 LLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVF 605
Query: 179 HISGKDNVVADTLSR 223
+ GK+N VAD LSR
Sbjct: 606 YKPGKENFVADALSR 620
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 49.6 bits (113), Expect = 4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLE-ARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
LLAI ++ ++ L +R+ IFTDH+PLT+A R N ++++ ++ Q +
Sbjct: 548 LLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVF 605
Query: 179 HISGKDNVVADTLSR 223
+ GK+N VAD LSR
Sbjct: 606 YKPGKENFVADALSR 620
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 49.6 bits (113), Expect = 4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLE-ARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
LLAI ++ ++ L +R+ IFTDH+PLT+A R N ++++ ++ Q +
Sbjct: 513 LLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVF 570
Query: 179 HISGKDNVVADTLSR 223
+ GK+N VAD LSR
Sbjct: 571 YKPGKENFVADALSR 585
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 49.6 bits (113), Expect = 4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLE-ARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
LLAI ++ ++ L +R+ IFTDH+PLT+A R N ++++ ++ Q +
Sbjct: 513 LLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVF 570
Query: 179 HISGKDNVVADTLSR 223
+ GK+N VAD LSR
Sbjct: 571 YKPGKENFVADALSR 585
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 49.6 bits (113), Expect = 4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLE-ARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
LLAI ++ ++ L +R+ IFTDH+PLT+A R N ++++ ++ Q +
Sbjct: 966 LLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVF 1023
Query: 179 HISGKDNVVADTLSR 223
+ GK+N VAD LSR
Sbjct: 1024 YKPGKENFVADALSR 1038
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 47.2 bits (107), Expect = 2e-05
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 2 LLAIYESVKYFR-HMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
+LAI S+ R ++ A ++TDH+PLT+A +R N ++++ + ++ ++
Sbjct: 482 MLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKAR--IEEYNCELI 539
Query: 179 HISGKDNVVADTLSRI 226
+ GK NVVAD LSRI
Sbjct: 540 YKPGKSNVVADALSRI 555
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +2
Query: 422 QVFQSLHSLSHPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSP 589
++ + H +H G + E+Y +P + R +C C+ K RH P
Sbjct: 695 EIIEKEHRRAHRGPTEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYKYERHPNKP 750
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1013
Score = 46.0 bits (104), Expect = 4e-05
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEA-RDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
LLAI ++ RH L A ++ IFTDH+PLT+A N ++++ + + I
Sbjct: 515 LLAIVWALAKLRHYLYAVKEINIFTDHQPLTFAVSESNPNAKIKRWKAR--IDESGARIF 572
Query: 179 HISGKDNVVADTLSR 223
+ G++N+VAD LSR
Sbjct: 573 YKPGRNNLVADALSR 587
>AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p
protein.
Length = 320
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 452 HPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSPI 592
H G T V Y W + K +E+VR C CQ++K T+H +P+
Sbjct: 60 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPM 106
>AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p
protein.
Length = 370
Score = 41.9 bits (94), Expect = 7e-04
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 452 HPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSPI 592
H G T + Y W + + +E++R C CQ SK T H +P+
Sbjct: 42 HTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPL 88
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 41.9 bits (94), Expect = 7e-04
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +2
Query: 2 LLAIYESVKYFRHMLEAR-DFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIR 178
+LAI ++K + L + IFTDH+PLT++ S N ++++ ++ ++ +I
Sbjct: 551 MLAIIWALKKLKIYLYGKAKVKIFTDHQPLTHSLSSWNGNARIKRWK--AYLEEYDYEIF 608
Query: 179 HISGKDNVVADTLSRIEEIAQ 241
+ G++N VAD LSR + Q
Sbjct: 609 YKPGRENTVADALSRGPTVEQ 629
Score = 35.1 bits (77), Expect = 0.082
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 440 HSLSHPGANATAKLVSERYVWPGVRKDCREWVRTCLACQRSKVTRHVYSP 589
H+ +H A +SER +P +RK V CL C+ +K RH P
Sbjct: 759 HNRAHRNAVENKAQLSERVYFPKMRKKVSAIVNQCLVCKTAKYDRHPTHP 808
>AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p
protein.
Length = 451
Score = 32.3 bits (70), Expect = 0.58
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 491 RYVWPGVRKDCREWVRTCLACQRSK 565
RY WPG+ + R++VR C C K
Sbjct: 119 RYYWPGMHRGVRKYVRNCECCMMYK 143
>BT023836-1|AAZ86757.1| 1199|Drosophila melanogaster LD18215p
protein.
Length = 1199
Score = 29.1 bits (62), Expect = 5.4
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 212 TLSRIEEIAQPIDLEQVAKAQQGDNEIKDLLEDNSSLCLRKVKLPGSRTELYCDV--GET 385
TL ++ QP + + A+A +G KD+L L + + L T ++ +V E
Sbjct: 505 TLQALDATGQPTENKWKARAHRGKYVFKDMLPGPYELTIPQGNLCYESTRVFLNVASAEE 564
Query: 386 VQRPFIPKQFRRQVFQSLHSL 448
PF+ K + + S +L
Sbjct: 565 DAPPFVHKGYEVSIISSHRAL 585
>BT011109-1|AAR82776.1| 1190|Drosophila melanogaster LD47325p
protein.
Length = 1190
Score = 29.1 bits (62), Expect = 5.4
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 212 TLSRIEEIAQPIDLEQVAKAQQGDNEIKDLLEDNSSLCLRKVKLPGSRTELYCDV--GET 385
TL ++ QP + + A+A +G KD+L L + + L T ++ +V E
Sbjct: 496 TLQALDATGQPTENKWKARAHRGKYVFKDMLPGPYELTIPQGNLCYESTRVFLNVASAEE 555
Query: 386 VQRPFIPKQFRRQVFQSLHSL 448
PF+ K + + S +L
Sbjct: 556 DAPPFVHKGYEVSIISSHRAL 576
>AY119169-1|AAM51029.1| 918|Drosophila melanogaster RH46576p
protein.
Length = 918
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +2
Query: 164 TTDIRHISGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDNEIKDLLEDNSSLCLRKVKL 343
TTD+ S KD+ A + + +P + ++ +I++L++ S + + K+
Sbjct: 226 TTDLDASSSKDSKAAVKFVNLNSVIRPFHQIRPMLCERFPGDIQELMQ--SDVLYLETKM 283
Query: 344 PGSRTELYCDVG 379
G R +L+ D G
Sbjct: 284 DGERFQLHIDRG 295
>AE014298-1936|AAF48298.1| 918|Drosophila melanogaster CG12176-PA
protein.
Length = 918
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +2
Query: 164 TTDIRHISGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDNEIKDLLEDNSSLCLRKVKL 343
TTD+ S KD+ A + + +P + ++ +I++L++ S + + K+
Sbjct: 226 TTDLDASSSKDSKAAVKFVNLNSVIRPFHQIRPMLCERFPGDIQELMQ--SDVLYLETKM 283
Query: 344 PGSRTELYCDVG 379
G R +L+ D G
Sbjct: 284 DGERFQLHIDRG 295
>AE013599-1009|AAF58849.1| 1199|Drosophila melanogaster CG1371-PA
protein.
Length = 1199
Score = 29.1 bits (62), Expect = 5.4
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 212 TLSRIEEIAQPIDLEQVAKAQQGDNEIKDLLEDNSSLCLRKVKLPGSRTELYCDV--GET 385
TL ++ QP + + A+A +G KD+L L + + L T ++ +V E
Sbjct: 505 TLQALDATGQPTENKWKARAHRGKYVFKDMLPGPYELTIPQGNLCYESTRVFLNVASAEE 564
Query: 386 VQRPFIPKQFRRQVFQSLHSL 448
PF+ K + + S +L
Sbjct: 565 DAPPFVHKGYEVSIISSHRAL 585
>AE013599-747|AAF59019.2| 323|Drosophila melanogaster CG8235-PA
protein.
Length = 323
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 113 ENCSPRQFRHLDFVSQFTTDIRHISGKDNVVADTLSRI 226
E+C+P + + V+ + H+ GK NVVA TL +
Sbjct: 283 ESCAPDLKTNGELVACYKGAALHVPGKGNVVAQTLKNV 320
>BT003500-1|AAO39504.1| 1169|Drosophila melanogaster RE45036p
protein.
Length = 1169
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 416 RRQVFQSLHSLSHPGANATAKLVSERYVWPGVRKDCREWVRTC 544
RR+VFQ L L + NAT + Y + + +C W C
Sbjct: 111 RREVFQELRQLDNIIQNATTTYDGDTYTY---KDNCARWENEC 150
>AE013599-158|AAF57274.2| 1169|Drosophila melanogaster CG11212-PA
protein.
Length = 1169
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 416 RRQVFQSLHSLSHPGANATAKLVSERYVWPGVRKDCREWVRTC 544
RR+VFQ L L + NAT + Y + + +C W C
Sbjct: 111 RREVFQELRQLDNIIQNATTTYDGDTYTY---KDNCARWENEC 150
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,072,554
Number of Sequences: 53049
Number of extensions: 629567
Number of successful extensions: 1751
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1723
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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