Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h24f
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 45 5e-05
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 45 5e-05
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 45 5e-05
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 30 1.6
AC006742-6|AAF60498.1| 778|Caenorhabditis elegans Hypothetical ... 28 4.9
AC006742-3|AAF60501.1| 778|Caenorhabditis elegans Hypothetical ... 28 4.9
AF039034-1|AAB94161.2| 423|Caenorhabditis elegans Hypothetical ... 28 6.5
Z81481-7|CAB63437.3| 511|Caenorhabditis elegans Hypothetical pr... 27 8.6
U23168-9|AAC38805.1| 196|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 44.8 bits (101), Expect = 5e-05
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 5 LAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRHI 184
LA+ +++ F+ ++ T+FTDHKPL + + R +R + +F I ++
Sbjct: 1379 LAMMFALRRFKTIIYGTAITVFTDHKPLISLL--KGSPLADRLWRWSIEILEFDVKIVYL 1436
Query: 185 SGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDNEIKDLLED--NSSLCLRKVK 340
+GK N VAD LSR ++ EQ + N I+ L D +SS L ++K
Sbjct: 1437 AGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLK 1490
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 380 ETVQRPFIPKQFRRQVFQSLHS---LSHPGANATAKLVSERYVWPGVRKDCREWVRTCLA 550
E R +P++ R + + LH H G ++V ++ WP +R VRTC
Sbjct: 1539 EEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAK 1598
Query: 551 C 553
C
Sbjct: 1599 C 1599
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 44.8 bits (101), Expect = 5e-05
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 5 LAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRHI 184
LA+ +++ F+ ++ T+FTDHKPL + + R +R + +F I ++
Sbjct: 1282 LAMMFALRRFKTIIYGTAITVFTDHKPLISLL--KGSPLADRLWRWSIEILEFDVKIVYL 1339
Query: 185 SGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDNEIKDLLED--NSSLCLRKVK 340
+GK N VAD LSR ++ EQ + N I+ L D +SS L ++K
Sbjct: 1340 AGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLK 1393
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 380 ETVQRPFIPKQFRRQVFQSLHS---LSHPGANATAKLVSERYVWPGVRKDCREWVRTCLA 550
E R +P++ R + + LH H G ++V ++ WP +R VRTC
Sbjct: 1442 EEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAK 1501
Query: 551 C 553
C
Sbjct: 1502 C 1502
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 44.8 bits (101), Expect = 5e-05
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 5 LAIYESVKYFRHMLEARDFTIFTDHKPLTYAFHSRKENCSPRQFRHLDFVSQFTTDIRHI 184
LA+ +++ F+ ++ T+FTDHKPL + + R +R + +F I ++
Sbjct: 1293 LAMMFALRRFKTIIYGTAITVFTDHKPLISLL--KGSPLADRLWRWSIEILEFDVKIVYL 1350
Query: 185 SGKDNVVADTLSRIEEIAQPIDLEQVAKAQQGDNEIKDLLED--NSSLCLRKVK 340
+GK N VAD LSR ++ EQ + N I+ L D +SS L ++K
Sbjct: 1351 AGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLK 1404
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 380 ETVQRPFIPKQFRRQVFQSLHS---LSHPGANATAKLVSERYVWPGVRKDCREWVRTCLA 550
E R +P++ R + + LH H G ++V ++ WP +R VRTC
Sbjct: 1453 EEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAK 1512
Query: 551 C 553
C
Sbjct: 1513 C 1513
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +2
Query: 176 RHISGKDNVVADTLSRIEEIAQPIDL--EQVAKAQQGDNEIKDL 301
R I+ K ++A T+ R EEI +DL ++ A+ +Q +NE K+L
Sbjct: 859 RRIAKKAALIAKTMKRKEEIETKVDLAEQRNAERRQVENEKKEL 902
>AC006742-6|AAF60498.1| 778|Caenorhabditis elegans Hypothetical
protein Y38C1AB.2 protein.
Length = 778
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 128 RQFRHLDFVSQFTTDIRHISGKDNVVADTLSRIEE-IAQPIDLEQVAKAQQGDNEIKDLL 304
+Q R D S +T + I G + +T SR++ + Q ++ Q+ K+ NEIKDLL
Sbjct: 649 QQNRKADLKSAMSTLQQEIMG--DRATETRSRLQSRVEQKVEGSQIEKSANFLNEIKDLL 706
>AC006742-3|AAF60501.1| 778|Caenorhabditis elegans Hypothetical
protein Y38C1AB.6 protein.
Length = 778
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 128 RQFRHLDFVSQFTTDIRHISGKDNVVADTLSRIEE-IAQPIDLEQVAKAQQGDNEIKDLL 304
+Q R D S +T + I G + +T SR++ + Q ++ Q+ K+ NEIKDLL
Sbjct: 649 QQNRKADLKSAMSTLQQEIMG--DRATETRSRLQSRVEQKVEGSQIEKSANFLNEIKDLL 706
>AF039034-1|AAB94161.2| 423|Caenorhabditis elegans Hypothetical
protein H22D07.1 protein.
Length = 423
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/91 (24%), Positives = 36/91 (39%)
Frame = -2
Query: 567 TLERWQAKQVRTHSLQSFRTPGHTYRSETSFAVALAPG*LSECRL*KTCRRNCFGMKGLC 388
++ERW+ H L F P + + G L + + +C +
Sbjct: 223 SMERWEKMYAINHFLFVFWIPCIVIIGSYIVVLLILQGHLKQDKASTSCFNFRVKSSDIM 282
Query: 387 TVSPTSQYNSVRDPGSFTFLRQREELSSKRS 295
T+ T Q + R P T+L Q+EE + RS
Sbjct: 283 TIDET-QSTTTRSPTRSTYLLQQEESFALRS 312
>Z81481-7|CAB63437.3| 511|Caenorhabditis elegans Hypothetical
protein C38D9.6 protein.
Length = 511
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = -3
Query: 551 KLSRYVPTLCSLSELQATRIAQKLVSLSHWRQG 453
+ SR+ +L SLS+L A I +KL+ S++++G
Sbjct: 427 RFSRFDVSLKSLSKLDAVLIREKLLKSSNFKRG 459
>U23168-9|AAC38805.1| 196|Caenorhabditis elegans Hypothetical
protein B0228.1 protein.
Length = 196
Score = 27.5 bits (58), Expect = 8.6
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Frame = +2
Query: 77 HKPLTYAFHSRKENCSPRQFRHL--DFVSQF----TTDIRHIS---GK--DNVVADTLSR 223
H+P + S + + ++F+ L DF+S + D+ + GK D+++ D +R
Sbjct: 15 HRPRGFTAGSDSKKLAVQRFKLLISDFLSDAQLSKSIDVAAVGMHKGKSMDDILDDVYTR 74
Query: 224 IEEIAQPIDLEQVAKAQQGDNEIKDLLEDNSSLCLRKVK 340
+ + ++AKAQ+G ++DL E ++ L +VK
Sbjct: 75 LRRTLSTKQISELAKAQKG--LVEDLDEKSAKLVKARVK 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,411
Number of Sequences: 27780
Number of extensions: 313997
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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