Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h24f
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.4  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   1.9  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   1.9  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   5.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   5.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 302 KGLLSRCLLAEPLLLAQGQWVVRSLRFGITCRQQH 198
           KG+LS  +LAEPL+    +  +  +   ++  Q H
Sbjct: 679 KGMLSEKILAEPLVKEHFKKALELMNRAVSVPQSH 713


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 85 WLVVRKDGKISGLQHVTKIF 26
          W VVRKD   SG+  +T  F
Sbjct: 36 WAVVRKDEVASGIAVMTAFF 55


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 85 WLVVRKDGKISGLQHVTKIF 26
          W VVRKD   SG+  +T  F
Sbjct: 36 WAVVRKDEVASGIAVMTAFF 55


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 473 LSHWRQGD*VSVDSERPVVETASE 402
           +SH   G    VD+E PVV   S+
Sbjct: 52  ISHQESGQPKQVDNETPVVSQGSD 75


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 25  EIFSSHVGGPRFYHLY 72
           EIFS+ +  P FY +Y
Sbjct: 407 EIFSTSMKDPAFYRIY 422


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 25  EIFSSHVGGPRFYHLY 72
           EIFS+ +  P FY +Y
Sbjct: 407 EIFSTSMKDPAFYRIY 422


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 85  WLVVRKDGKISG 50
           W V RK+GK+ G
Sbjct: 141 WTVERKEGKVEG 152


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 85  WLVVRKDGKISG 50
           W V RK+GK+ G
Sbjct: 157 WTVERKEGKVEG 168


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 85  WLVVRKDGKISG 50
           W V RK+GK+ G
Sbjct: 214 WTVERKEGKVEG 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,757
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)