Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h23r
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    28   1.2  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   3.6  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    26   6.4  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   8.4  

>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 458 VPSETTPRRAASLHDLQAPPTRSVSDLR 375
           +P + TPRRA  + +L A PTR+  +L+
Sbjct: 294 LPYKVTPRRAGDVVNLTANPTRANEELK 321


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 452 SETTPRRAASLHDLQAPPTRSVSDLRQFFEAVARGAGPGCGTSARHSAPP 303
           + TTPR  A+ +      + S  +      A + G G G GT A H + P
Sbjct: 161 TRTTPRPTATTNTSNQSTSNSTRNGTS--AATSNGTGTGAGTGASHRSSP 208


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 650 GRHAIEAARRKTASLETRARSCSPNAHEAVAQYVPVKERRA 528
           G  +IEA +      ET+ R    +A EA  +Y+   E+R+
Sbjct: 43  GYSSIEALKNAVVKQETKLRDFRLSAAEARKRYIEAVEKRS 83


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 556 STCRSRNAGRCLNRYLDTVGV*LGVPSSWRDPWS 455
           +T ++   G+  NR +  + V     + W DPWS
Sbjct: 2   ATVKNLRIGKSPNRLIQDLDVFDSPSAGWNDPWS 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,182
Number of Sequences: 5004
Number of extensions: 41530
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)