Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h23r
         (731 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL359054-1|CAB94389.1|  259|Homo sapiens LDL induced endothelial...    34   0.46 
X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.                32   2.4  
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot...    32   2.4  
AK054974-1|BAB70835.1|  169|Homo sapiens protein ( Homo sapiens ...    32   2.4  
AL833927-1|CAD38783.1|  843|Homo sapiens hypothetical protein pr...    31   3.2  
AB040976-1|BAA96067.1|  917|Homo sapiens KIAA1543 protein protein.     31   3.2  

>AL359054-1|CAB94389.1|  259|Homo sapiens LDL induced endothelial
           cell protein protein.
          Length = 259

 Score = 34.3 bits (75), Expect = 0.46
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = -1

Query: 503 GGSLARSTEQLARPVVP-SETTPRRAAS-LHDLQAPPTRSVSDLRQFFEAVARGAGPGCG 330
           GG+ A  +    R + P +  TPR  A  +    APP RS  ++     A+ARG+    G
Sbjct: 10  GGTSALGSRASGRRLFPGTPPTPRTPAPPVPASPAPPARSCPEVSVPPPALARGSPGPPG 69

Query: 329 TSARHSA---PPEALP 291
           TSAR S    PP  LP
Sbjct: 70  TSARSSGPERPPHGLP 85


>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
          Length = 3259

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -1

Query: 689  LKRWEGTAGGAERGRHAIEAARRKTASLETRARSCSPNAHEAVAQYVPVKERRALFESLS 510
            L+ +E  +  AER +H +EA R++   L  + RS   N  E   Q   ++E     E + 
Sbjct: 1619 LQSYENVSNEAERIQHVVEAVRQEKQELYGKLRSTEANKKETEKQ---LQEAEQEMEEMK 1675

Query: 509  RHGGSLARSTEQ 474
                  A+S +Q
Sbjct: 1676 EKMRKFAKSKQQ 1687


>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 protein.
          Length = 3225

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -1

Query: 689  LKRWEGTAGGAERGRHAIEAARRKTASLETRARSCSPNAHEAVAQYVPVKERRALFESLS 510
            L+ +E  +  AER +H +EA R++   L  + RS   N  E   Q   ++E     E + 
Sbjct: 1585 LQSYENVSNEAERIQHVVEAVRQEKQELYGKLRSTEANKKETEKQ---LQEAEQEMEEMK 1641

Query: 509  RHGGSLARSTEQ 474
                  A+S +Q
Sbjct: 1642 EKMRKFAKSKQQ 1653


>AK054974-1|BAB70835.1|  169|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30412 fis, clone BRACE2008653. ).
          Length = 169

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -1

Query: 524 FESLSRHGGSLARSTEQLARPVVPSETTPRRAASLHDLQAPP 399
           FESLS   GS +R    L RP+ PS      A   H   APP
Sbjct: 12  FESLSHCPGSSSRKVHDLGRPLKPSPLCDTWAWCPHPTWAPP 53


>AL833927-1|CAD38783.1|  843|Homo sapiens hypothetical protein
           protein.
          Length = 843

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 476 QLARPVVPSETTPRRAASLHDLQAPPTRSVSDLRQFFEAVARGAGPGCGTSARHSAPPEA 297
           + ++P  PSE +P+  AS         +  S   +  + V   A  G G+     APPEA
Sbjct: 130 EASKPPAPSEGSPKAVASSPAATNSEVKMTSFAERKKQLVKAEAEAGAGSPTSTPAPPEA 189

Query: 296 LPS 288
           L S
Sbjct: 190 LSS 192


>AB040976-1|BAA96067.1|  917|Homo sapiens KIAA1543 protein protein.
          Length = 917

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 476 QLARPVVPSETTPRRAASLHDLQAPPTRSVSDLRQFFEAVARGAGPGCGTSARHSAPPEA 297
           + ++P  PSE +P+  AS         +  S   +  + V   A  G G+     APPEA
Sbjct: 204 EASKPPAPSEGSPKAVASSPAATNSEVKMTSFAERKKQLVKAEAEAGAGSPTSTPAPPEA 263

Query: 296 LPS 288
           L S
Sbjct: 264 LSS 266


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,904,657
Number of Sequences: 237096
Number of extensions: 1807931
Number of successful extensions: 5871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5864
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)