Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h23r
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical pr...    37   0.013
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    29   2.6  
AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical ...    29   3.4  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      28   5.9  
AY126454-1|AAM95163.1|  555|Caenorhabditis elegans nesprin-like ...    28   5.9  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   5.9  
Z93374-9|CAC70078.1|  116|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z93374-8|CAB07555.1|  359|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF273796-1|AAG15144.1|  116|Caenorhabditis elegans nuclear recep...    28   7.8  

>Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical
           protein C09G1.4 protein.
          Length = 546

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 482 TEQLARPVVPSETTPRRAASLHDLQAPPTRSVSDLR-QFFEAVARGAGPGCGTSARHSAP 306
           T   AR +    TTPRR       QAP T + +  R +F + V  GA    GTS+ H +P
Sbjct: 97  TPNSARKIASYSTTPRRLPLQPQQQAPATATKAKYRVRFADEVDSGASTSSGTSSTHISP 156


>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
           protein Y116A8C.36 protein.
          Length = 1097

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 3/123 (2%)
 Frame = +1

Query: 259 VCAVYHTHVSEGRASGGALCRALVPQPGPAPRATASKN*RRSLTDRVGGACKSCSDAARR 438
           V A  H     G     +   +  P P PAP  T +     +  D  G   K  +DA++R
Sbjct: 580 VHAQTHARSKIGEFEAKSAPASAAPAPAPAPAPTTTNGFPANFNDAFGEFDK--TDASQR 637

Query: 439 GVVSDGTTGRASCSVLLARLPPCRDNDSNSARRSLTGTYCATASCAF---GEHDLALVSN 609
                G T  A     +A+ P       + +  ++  TY   A  AF    E +L+    
Sbjct: 638 FDADFGATSTADPFAQIAQAPAHSKGAVDQSAFNIHDTYKCRALFAFEARSEDELSFEPG 697

Query: 610 DAV 618
           D +
Sbjct: 698 DVI 700


>AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical
           protein K08A2.1 protein.
          Length = 411

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 331 PQPGPAPRATASKN*RRSLTDRVGGACKSCSDAARRGVVSDGTTGRASCSV 483
           P P   P AT   +    +  RVG       + AR+G VS GT+  ++ SV
Sbjct: 286 PPPRLLPAATTESHQTEPVLPRVGALLILVPETARQGSVSSGTSESSNGSV 336


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 505 CRDNDSNSARRSLTGTYCATASCAFGE 585
           C  N +N A +S    +C++A CA GE
Sbjct: 697 CNGNLNNFATQSECNNFCSSAGCAVGE 723


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
 Frame = -1

Query: 728  RAARSESEQGRRYLKRWEGTAGGAERGRHAI-----EAARRKTASLETRARSCSPNAHEA 564
            R +  + E+  R ++ W+ T     R    I     E+       +E  +++        
Sbjct: 856  RESIRDMEECDRIIEGWQSTEIEELRAEWNIKLSEFESWHEMMQQVEVLSQTIQTRLDVT 915

Query: 563  VAQYVPVKERRALFESLSRHGGSLARSTEQLARPVVPSETTPRRAASLHDLQAPPTRSVS 384
            V Q + + + R+     S  GG+L  S EQLA     SET+  R   L +L+    +   
Sbjct: 916  VIQTIWILKERSYDIKHSELGGTLRESLEQLA---TTSETSVNR--HLQNLELSNEQDCP 970

Query: 383  DLRQFFEAVAR 351
            D  +F E V R
Sbjct: 971  DAIEFLEEVGR 981


>AY126454-1|AAM95163.1|  555|Caenorhabditis elegans nesprin-like
           protein protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
 Frame = -1

Query: 728 RAARSESEQGRRYLKRWEGTAGGAERGRHAI-----EAARRKTASLETRARSCSPNAHEA 564
           R +  + E+  R ++ W+ T     R    I     E+       +E  +++        
Sbjct: 168 RESIRDMEECDRIIEGWQSTEIEELRAEWNIKLSEFESWHEMMQQVEVLSQTIQTRLDVT 227

Query: 563 VAQYVPVKERRALFESLSRHGGSLARSTEQLARPVVPSETTPRRAASLHDLQAPPTRSVS 384
           V Q + + + R+     S  GG+L  S EQLA     SET+  R   L +L+    +   
Sbjct: 228 VIQTIWILKERSYDIKHSELGGTLRESLEQLA---TTSETSVNR--HLQNLELSNEQDCP 282

Query: 383 DLRQFFEAVAR 351
           D  +F E V R
Sbjct: 283 DAIEFLEEVGR 293


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
 Frame = -1

Query: 728  RAARSESEQGRRYLKRWEGTAGGAERGRHAI-----EAARRKTASLETRARSCSPNAHEA 564
            R +  + E+  R ++ W+ T     R    I     E+       +E  +++        
Sbjct: 856  RESIRDMEECDRIIEGWQSTEIEELRAEWNIKLSEFESWHEMMQQVEVLSQTIQTRLDVT 915

Query: 563  VAQYVPVKERRALFESLSRHGGSLARSTEQLARPVVPSETTPRRAASLHDLQAPPTRSVS 384
            V Q + + + R+     S  GG+L  S EQLA     SET+  R   L +L+    +   
Sbjct: 916  VIQTIWILKERSYDIKHSELGGTLRESLEQLA---TTSETSVNR--HLQNLELSNEQDCP 970

Query: 383  DLRQFFEAVAR 351
            D  +F E V R
Sbjct: 971  DAIEFLEEVGR 981


>Z93374-9|CAC70078.1|  116|Caenorhabditis elegans Hypothetical
           protein C06C6.5b protein.
          Length = 116

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 406 ACKSCSDAARRGVVSDGTTGRASCSVLLARLPPCRD 513
           +C++C+   RR   S    G+ +C+V      PCR+
Sbjct: 19  SCRACAAFFRRYFHSKKVVGQCNCAVRFRNSHPCRE 54


>Z93374-8|CAB07555.1|  359|Caenorhabditis elegans Hypothetical
           protein C06C6.5a protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 406 ACKSCSDAARRGVVSDGTTGRASCSVLLARLPPCRD 513
           +C++C+   RR   S    G+ +C+V      PCR+
Sbjct: 19  SCRACAAFFRRYFHSKKVVGQCNCAVRFRNSHPCRE 54


>AF273796-1|AAG15144.1|  116|Caenorhabditis elegans nuclear receptor
           NHR-50 protein.
          Length = 116

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 406 ACKSCSDAARRGVVSDGTTGRASCSVLLARLPPCRD 513
           +C++C+   RR   S    G+ +C+V      PCR+
Sbjct: 19  SCRACAAFFRRYFHSKKVVGQCNCAVRFRNSHPCRE 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,020
Number of Sequences: 27780
Number of extensions: 263579
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)