Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h23f
         (589 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4TKR9 Cluster: Membrane protein precursor; n=18; Prote...    37   0.30 
UniRef50_Q8C865 Cluster: 16 days embryo head cDNA, RIKEN full-le...    36   0.93 
UniRef50_Q4RTN7 Cluster: Chromosome 2 SCAF14997, whole genome sh...    35   1.6  
UniRef50_P08630 Cluster: Tyrosine-protein kinase Btk29A; n=10; E...    33   4.9  
UniRef50_UPI0000F1E4ED Cluster: PREDICTED: hypothetical protein;...    32   8.6  
UniRef50_Q3JS97 Cluster: Unnamed protein product; n=10; Burkhold...    32   8.6  
UniRef50_Q28SZ0 Cluster: Peptidoglycan-binding domain 1; n=1; Ja...    32   8.6  
UniRef50_A6WZ75 Cluster: Resolvase domain protein; n=1; Ochrobac...    32   8.6  
UniRef50_Q0IXC9 Cluster: Os10g0447400 protein; n=3; Eukaryota|Re...    32   8.6  
UniRef50_Q293W7 Cluster: GA20257-PA; n=2; Coelomata|Rep: GA20257...    32   8.6  

>UniRef50_A4TKR9 Cluster: Membrane protein precursor; n=18;
            Proteobacteria|Rep: Membrane protein precursor - Yersinia
            pestis (strain Pestoides F)
          Length = 1140

 Score = 37.1 bits (82), Expect = 0.30
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 295  GLRKLRPELTPGPIPTLIDPNIRISGALRQYYNDDLESWV---WVQVAVQGGCLLAW 456
            G + LR EL   P+P +++ N+ I G    Y+N  +ESW    W     + G +L W
Sbjct: 988  GSQGLRFELLARPVPNVVETNLAIDGQKLHYFN-QMESWQSFRWPGETYKPGTMLTW 1043


>UniRef50_Q8C865 Cluster: 16 days embryo head cDNA, RIKEN
           full-length enriched library, clone:C130046B21
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
           full-length enriched library, clone:C130046B21
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 265

 Score = 35.5 bits (78), Expect = 0.93
 Identities = 32/98 (32%), Positives = 42/98 (42%)
 Frame = -3

Query: 536 GSIGAVRRCR*RRGSLAACLLGRVPSRHASKHPPWTATCTHTHDSRSSL*Y*RSAPDILI 357
           GS G  RR    RG  A     R+ S H  +  P++   +H    R S    R   D   
Sbjct: 39  GSEGVQRREE--RGG-ARAKGARIQSSHLPRRLPYSLAPSHCSRPRLS----RGTLDRQT 91

Query: 356 LGSIRVGIGPGVNSGRSFLNPATTRGAGDCSPTSISPH 243
            G   VG+G GV  GR +L P   + AG  + T + PH
Sbjct: 92  PGGC-VGVGGGVGWGRMWLGPPRPQPAGGKAGTRVEPH 128


>UniRef50_Q4RTN7 Cluster: Chromosome 2 SCAF14997, whole genome
           shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 2
           SCAF14997, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 104

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 347 IRVGIGPGVNSGRSFLNPATTRGAGDCSPTSISPHHC 237
           ++ G+  G N G+SF       G     PTS+SP HC
Sbjct: 10  LKTGVRDGPNKGKSFYVCVDKEGCDFSQPTSVSPSHC 46


>UniRef50_P08630 Cluster: Tyrosine-protein kinase Btk29A; n=10;
           Endopterygota|Rep: Tyrosine-protein kinase Btk29A -
           Drosophila melanogaster (Fruit fly)
          Length = 786

 Score = 33.1 bits (72), Expect = 4.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 353 GSIRVGIGPGVNSGRSFLNPATTRGAGDCSPTSISPHH--CTFKHYTTI 213
           GS+  G+G G+  G S        G G C+PTS+ P     TFK   T+
Sbjct: 263 GSLGGGVGGGLGGGGSLGLGGGGGGGGSCTPTSLQPQSSLTTFKQSPTL 311


>UniRef50_UPI0000F1E4ED Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 696

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 259 VGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYNDDLESW 411
           +G  SP P+  AGL ++ P   P P    + P    +  + +Y ND L +W
Sbjct: 193 IGASSPDPQAQAGLSRVSPS-PPAPSVQELSPG-PTAQVMERYLNDSLHAW 241


>UniRef50_Q3JS97 Cluster: Unnamed protein product; n=10; Burkholderia
            pseudomallei|Rep: Unnamed protein product - Burkholderia
            pseudomallei (strain 1710b)
          Length = 6274

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +1

Query: 244  CGEMLVGEQSPAPRVV--AGLRKLRPELTPGPIPTLIDPNIRISGALRQYYNDDL-ESWV 414
            C E   G+  P  R V  A L  L   L P P   + +  +   G  R+Y NDD   +  
Sbjct: 5833 CAEPYAGDTVPIGRPVGNASLHVLDAHLQPVPRGVIGEICVASPGLARRYLNDDEGTARA 5892

Query: 415  WVQVAVQGGCLLAWRDG 465
            +V++ V G  L  +R G
Sbjct: 5893 FVEIVVDGAPLRLYRTG 5909


>UniRef50_Q28SZ0 Cluster: Peptidoglycan-binding domain 1; n=1;
           Jannaschia sp. CCS1|Rep: Peptidoglycan-binding domain 1
           - Jannaschia sp. (strain CCS1)
          Length = 498

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 247 GEMLVGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPN 357
           G  +VG Q P  RV+   +   P + PGP P  + P+
Sbjct: 44  GAAIVGSQQPRTRVIVPQQPAPPRVQPGPPPPRVQPS 80


>UniRef50_A6WZ75 Cluster: Resolvase domain protein; n=1;
           Ochrobactrum anthropi ATCC 49188|Rep: Resolvase domain
           protein - Ochrobactrum anthropi (strain ATCC 49188 / DSM
           6882 / NCTC 12168)
          Length = 540

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 265 EQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYNDDLES 408
           ++ P   +V+ LRK+  E+T  P P+ + P I + G L     +D+E+
Sbjct: 470 QKEPHSALVSSLRKVVAEVTVHPSPSNMTPIIEVKGWLASLIGEDVEN 517


>UniRef50_Q0IXC9 Cluster: Os10g0447400 protein; n=3; Eukaryota|Rep:
           Os10g0447400 protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 239

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = -3

Query: 569 SSRSLDSWKALGSIGAVRRCR*RRGSLAACLLGRVPSRHASKHPPWTATCTHTHDSR 399
           ++ +L+  +A G  GA R C  RR   A   L   P   A  HPP T     T D R
Sbjct: 44  AAATLEKGEAAGGAGAGRSCLRRRARSAHHRLLHPPLPRAHTHPPATPLTARTKDLR 100


>UniRef50_Q293W7 Cluster: GA20257-PA; n=2; Coelomata|Rep: GA20257-PA -
            Drosophila pseudoobscura (Fruit fly)
          Length = 2329

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 353  GSIRVGIGPGVNSGRSFLNPATTRGAGDCS-PTSISPHHCTFKHYTTIYQHHNSK 192
            GS  +GIG G  SG     P  T      S  T+++  H   +++TTI  HHNS+
Sbjct: 1702 GSGNIGIGVGNGSGGGGGGPHNTNNINSYSNSTTLNQSH--HQNHTTITNHHNSQ 1754


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,605,001
Number of Sequences: 1657284
Number of extensions: 11738868
Number of successful extensions: 35011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34996
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)