Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h23f
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.47 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.3  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   4.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 250 EMLVGEQSPAP--RVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQ 384
           E+L G   P P   V +GL  +RP LT   I      N++    LRQ
Sbjct: 344 EILYGRTPPNPLDAVTSGLLPVRPPLTREEIHEKARENLKHHANLRQ 390


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 495 QPRRLPPRQGAVSPRQQAPAL 433
           +P  LPP++   SP++ +P L
Sbjct: 67  RPVALPPKREIPSPKRSSPIL 87


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 281 GAGDCSPTSISPHHCTFKHY 222
           G G   P +I+ + CT  HY
Sbjct: 39  GEGSFKPQNINANLCTHVHY 58


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 281 GAGDCSPTSISPHHCT 234
           GAG  +P  I+P  CT
Sbjct: 537 GAGKFTPEDINPSLCT 552


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 492 PRRLPPRQGAVSPRQQAPALDGHLHPHPR 406
           P +  P QG   P   A AL   L+P  R
Sbjct: 209 PIQQQPNQGQQPPGNTAAALPSPLYPWMR 237


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 492 PRRLPPRQGAVSPRQQAPALDGHLHPHPR 406
           P +  P QG   P   A AL   L+P  R
Sbjct: 211 PIQQQPNQGQQPPGNTAAALPSPLYPWMR 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,901
Number of Sequences: 336
Number of extensions: 2920
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)