Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h23f
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    27   2.7  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   4.7  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   8.2  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.2  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   8.2  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   8.2  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    25   8.2  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   8.2  

>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 232 KVQWCGEMLVGEQSPAPRVVAGLRKLRPEL 321
           K  +CG M   E  P  + V  +R L PEL
Sbjct: 86  KKDYCGSMADSENGPVIKAVKEIRHLFPEL 115


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 45 KWISLVIDNNTRDITNYF 98
          KW  L++D  T DI N+F
Sbjct: 23 KWKVLIVDTKTADIINHF 40


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 382 QYYNDDLESWVWVQVAVQGGCLL 450
           Q  ND++  W ++ VA  GG LL
Sbjct: 87  QINNDEIGIWNYISVAEMGGVLL 109


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -3

Query: 245 HHCTFKHYTTIYQH-HNS 195
           HHC +K+YT I +  HNS
Sbjct: 349 HHCRWKYYTLISRDIHNS 366


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 382 QYYNDDLESWVWVQVAVQGGCLL 450
           Q  ND++  W ++ VA  GG LL
Sbjct: 87  QINNDEIGIWNYISVAEMGGVLL 109


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 382 QYYNDDLESWVWVQVAVQGGCLL 450
           Q  ND++  W ++ VA  GG LL
Sbjct: 59  QINNDEIGIWNYISVAEMGGVLL 81


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -1

Query: 589 EMWQRQCRHGVSTVGKRWEASALS 518
           + W + C+ G+  + K+W+ + L+
Sbjct: 163 DFWTKACKDGIKHIFKKWKNTPLA 186


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 382 QYYNDDLESWVWVQVAVQGGCLL 450
           Q  ND++  W ++ VA  GG LL
Sbjct: 87  QINNDEIGIWNYISVAEMGGVLL 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,413
Number of Sequences: 5004
Number of extensions: 44422
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)