Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h23f
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0200 - 1589768-1590023,1591134-1591264                           29   3.6  
04_04_0388 + 24873624-24873806,24873908-24873979,24874088-248741...    28   4.8  
05_01_0369 + 2907180-2907764,2907899-2908276                           27   8.4  

>03_01_0200 - 1589768-1590023,1591134-1591264
          Length = 128

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -2

Query: 492 PRRLPPRQGAVSPRQQAPALDGHLHPHP 409
           PRRLPP   AV PR     L G   P P
Sbjct: 21  PRRLPPAVSAVPPRAARVVLRGFRLPDP 48


>04_04_0388 +
           24873624-24873806,24873908-24873979,24874088-24874150,
           24874413-24874764,24874869-24875060,24875356-24875774
          Length = 426

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 382 QYYNDDLESWVWVQVAV 432
           Q+  DDL+SW+W+Q A+
Sbjct: 78  QWKYDDLKSWIWLQKAI 94


>05_01_0369 + 2907180-2907764,2907899-2908276
          Length = 320

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 463 RLATPASTRLGRPLAPTPTTRDHRCN 386
           +LA PA + +  P AP P + D RC+
Sbjct: 25  QLAAPALSAMAPPAAPLPGSADPRCH 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,886
Number of Sequences: 37544
Number of extensions: 345906
Number of successful extensions: 1006
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)