Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h23f
         (589 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S40719-1|AAB22581.1|  432|Homo sapiens glial fibrillary acidic p...    30   7.0  
J04569-1|AAA52528.1|  432|Homo sapiens GFAP protein.                   30   7.0  
BC062609-1|AAH62609.1|  431|Homo sapiens GFAP protein protein.         30   7.0  
BC041765-1|AAH41765.1|  432|Homo sapiens glial fibrillary acidic...    30   7.0  
BC013596-1|AAH13596.1|  432|Homo sapiens glial fibrillary acidic...    30   7.0  
AK222683-1|BAD96403.1|  432|Homo sapiens glial fibrillary acidic...    30   7.0  
AK128790-1|BAC87610.1|  431|Homo sapiens protein ( Homo sapiens ...    30   7.0  
AF419299-1|AAL16662.1|  432|Homo sapiens glial fibrillary acidic...    30   7.0  
AB052764-1|BAC53797.1|  345|Homo sapiens shank-interacting prote...    29   9.2  

>S40719-1|AAB22581.1|  432|Homo sapiens glial fibrillary acidic
           protein protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 247 GEMLVGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYND 396
           GEM+VG  +P  R+  G R L     P P+PT +D    ++GAL   + +
Sbjct: 18  GEMMVGGLAPGRRLGPGTR-LSLARMPPPLPTRVD--FSLAGALNAGFKE 64


>J04569-1|AAA52528.1|  432|Homo sapiens GFAP protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 247 GEMLVGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYND 396
           GEM+VG  +P  R+  G R L     P P+PT +D    ++GAL   + +
Sbjct: 18  GEMMVGGLAPGRRLGPGTR-LSLARMPPPLPTRVD--FSLAGALNAGFKE 64


>BC062609-1|AAH62609.1|  431|Homo sapiens GFAP protein protein.
          Length = 431

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 247 GEMLVGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYND 396
           GEM+VG  +P  R+  G R L     P P+PT +D    ++GAL   + +
Sbjct: 17  GEMMVGGLAPGRRLGPGTR-LSLARMPPPLPTRVD--FSLAGALNAGFKE 63


>BC041765-1|AAH41765.1|  432|Homo sapiens glial fibrillary acidic
           protein protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 247 GEMLVGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYND 396
           GEM+VG  +P  R+  G R L     P P+PT +D    ++GAL   + +
Sbjct: 18  GEMMVGGLAPGRRLGPGTR-LSLARMPPPLPTRVD--FSLAGALNAGFKE 64


>BC013596-1|AAH13596.1|  432|Homo sapiens glial fibrillary acidic
           protein protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 247 GEMLVGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYND 396
           GEM+VG  +P  R+  G R L     P P+PT +D    ++GAL   + +
Sbjct: 18  GEMMVGGLAPGRRLGPGTR-LSLARMPPPLPTRVD--FSLAGALNAGFKE 64


>AK222683-1|BAD96403.1|  432|Homo sapiens glial fibrillary acidic
           protein variant protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 247 GEMLVGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYND 396
           GEM+VG  +P  R+  G R L     P P+PT +D    ++GAL   + +
Sbjct: 18  GEMMVGGLAPGRRLGPGTR-LSLARMPPPLPTRVD--FSLAGALNAGFKE 64


>AK128790-1|BAC87610.1|  431|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45472 fis, clone BRSTN2016918, highly  similar
           to Glial fibrillary acidic protein, astrocyte. ).
          Length = 431

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 247 GEMLVGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYND 396
           GEM+VG  +P  R+  G R L     P P+PT +D    ++GAL   + +
Sbjct: 18  GEMMVGGLAPGRRLGPGTR-LSLARMPPPLPTRVD--FSLAGALNAGFKE 64


>AF419299-1|AAL16662.1|  432|Homo sapiens glial fibrillary acidic
           protein protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 247 GEMLVGEQSPAPRVVAGLRKLRPELTPGPIPTLIDPNIRISGALRQYYND 396
           GEM+VG  +P  R+  G R L     P P+PT +D    ++GAL   + +
Sbjct: 18  GEMMVGGLAPGRRLGPGTR-LSLARMPPPLPTRVD--FSLAGALNAGFKE 64


>AB052764-1|BAC53797.1|  345|Homo sapiens shank-interacting
           protein-like 1 alpha protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 521 QRRCFPT-LSNCRDSVTTLPLPH 586
           Q  CFP   S CR  + TLPLPH
Sbjct: 210 QEACFPPGPSGCRSHLKTLPLPH 232


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,913,284
Number of Sequences: 237096
Number of extensions: 1841817
Number of successful extensions: 4469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4469
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)