Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h23f
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-11|AAM22028.1|  686|Caenorhabditis elegans Hypothetical p...    29   1.9  
U41534-10|AAK68177.1|  687|Caenorhabditis elegans Hypothetical p...    29   1.9  
U41534-9|AAM22029.1|  690|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.      29   2.4  
AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp (sp...    29   2.4  
Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>U41534-11|AAM22028.1|  686|Caenorhabditis elegans Hypothetical
           protein C16A3.1b protein.
          Length = 686

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 265 EQSPAPRVVAGLRKLRPELTPGPIPTLIDPNI 360
           E  P P+ + GL   +P+  P  + T++DP++
Sbjct: 161 ELEPLPQNIIGLTNFKPKAAPSDLNTVMDPSL 192


>U41534-10|AAK68177.1|  687|Caenorhabditis elegans Hypothetical
           protein C16A3.1a protein.
          Length = 687

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 265 EQSPAPRVVAGLRKLRPELTPGPIPTLIDPNI 360
           E  P P+ + GL   +P+  P  + T++DP++
Sbjct: 162 ELEPLPQNIIGLTNFKPKAAPSDLNTVMDPSL 193


>U41534-9|AAM22029.1|  690|Caenorhabditis elegans Hypothetical
           protein C16A3.1c protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 265 EQSPAPRVVAGLRKLRPELTPGPIPTLIDPNI 360
           E  P P+ + GL   +P+  P  + T++DP++
Sbjct: 165 ELEPLPQNIIGLTNFKPKAAPSDLNTVMDPSL 196


>U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.
          Length = 655

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 317 SGRSFLNPATTRGAGDCSPTSISPHHCTFKHYTTIYQHH 201
           +GR FL    TR A +     + P HC F ++T +   +
Sbjct: 145 NGRQFLTQLMTREARNYQFDFLKPAHCNFTYFTKLVDQY 183


>AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 21 protein.
          Length = 655

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 317 SGRSFLNPATTRGAGDCSPTSISPHHCTFKHYTTIYQHH 201
           +GR FL    TR A +     + P HC F ++T +   +
Sbjct: 145 NGRQFLTQLMTREARNYQFDFLKPAHCNFTYFTKLVDQY 183


>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 90  NYFELKYNDYDSWLCCFDKRCSFRAQRFIQYSILF*IVMLINCCVVLK 233
           N + L Y +Y SWL  F  +CS  +   +  ++ F IV +IN     K
Sbjct: 165 NCYILYYVEYLSWLPDFSPQCSGNSGILLFMAVNFAIVSVINVATFAK 212


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 353 GSIRVGIGPGVNS-GRSFLNPATTRGAGDCS 264
           G   V  G G+ S  R+FLNPAT   +GDCS
Sbjct: 506 GECSVQCGHGMRSRNRTFLNPATK--SGDCS 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,844
Number of Sequences: 27780
Number of extensions: 272717
Number of successful extensions: 751
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)