Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h22f
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 173 6e-44
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 94 5e-20
Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical pr... 29 3.1
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 28 4.1
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 28 4.1
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 4.1
U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical pr... 27 7.1
U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical pr... 27 7.1
U13876-13|AAA21172.3| 370|Caenorhabditis elegans Prion-like-(q/... 27 9.4
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 173 bits (422), Expect = 6e-44
Identities = 82/171 (47%), Positives = 112/171 (65%), Gaps = 1/171 (0%)
Frame = +1
Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
RY+TK R GRGF+L+E++AAG++ ARTIGIAVD RR NK+ E L+ N R+KEY+A+
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123
Query: 412 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEK 561
LILFP K KG+++ EE K+A QLRG ++P+ R +T+ E+
Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAER 174
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 94.3 bits (224), Expect = 5e-20
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +1
Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 232 VRYHTKVRAGRGFTLREIRAAGLN 303
RY+TK R GRGF+L+E++AA N
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAEEN 87
>Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical
protein ZK1010.8 protein.
Length = 388
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = -2
Query: 188 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 99
RGAT A+A + I++CF+++ GW QV+ N+
Sbjct: 9 RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 415 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKN 564
++F K VLK + + A +GPL+P Q AP +V IT+ +N
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIEN 927
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 415 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKN 564
++F K VLK + + A +GPL+P Q AP +V IT+ +N
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIEN 927
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 415 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKN 564
++F K VLK + + A +GPL+P Q AP +V IT+ +N
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIEN 949
>U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical
protein F18A1.6a protein.
Length = 731
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 430 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 525
GK + NEE+R+LA LR + PAP
Sbjct: 206 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237
>U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical
protein F18A1.6b protein.
Length = 734
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 430 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 525
GK + NEE+R+LA LR + PAP
Sbjct: 209 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240
>U13876-13|AAA21172.3| 370|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 46
protein.
Length = 370
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 454 ANEEERKLATQLRGPLMPVQQPAPKSVARP 543
A + ++++ Q++ P PVQQP P + P
Sbjct: 102 AQQPQQQVQQQVQQPQQPVQQPQPTPIRPP 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,822,034
Number of Sequences: 27780
Number of extensions: 265581
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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