Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h21f
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.80 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 424  LDKYLIPSSQTGESKVFYYKMKGDYH-RYLAEFATGNDRKEAAENSLVAYKAAS 582
            +D+ L+P SQ   + VF  +    YH R +AE   G          + A +A S
Sbjct: 924  IDRVLVPGSQQNVAGVFNLRPATTYHLRIVAENEIGASDPSDTVTIITAEEAPS 977


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 583 RRLPCTRPASSRQ 545
           +++PCT+P S+ Q
Sbjct: 310 KKMPCTQPPSAPQ 322


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 507 PGRVRDRQRPQGGCR 551
           PGRVR R +P   C+
Sbjct: 410 PGRVRRRYQPAFRCK 424


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 GARRASWRIISSIEQKEETKGAED 345
           G  R S   ++S+  +EET+ AED
Sbjct: 37  GKSRQSSFEVTSLLMREETEDAED 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,202
Number of Sequences: 438
Number of extensions: 3364
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)