Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h19r
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    28   1.2  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   6.2  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   8.2  

>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 587 SKGSRQMEGSRMGETDAAGESRPSVMRKTTRGG 685
           S GS   + SR  +T + G+S+ +  RKTT+GG
Sbjct: 136 SGGSYTTDPSRTDDTASYGQSQYNQSRKTTQGG 168


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 83 TVVSCNLNIKSMSYIYNRI*FLDRIKK 3
          T+ SC LN  +M +  NR+  +D IK+
Sbjct: 6  TIASCQLNQWAMDFEGNRLRIIDSIKE 32


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 134 KYLARKTVSFENFNSNHTVVSCNLNIKSMSYIYNR 30
           ++ A +T++       H V SCNLNI+S+    NR
Sbjct: 324 RFSAIRTLNELAMTRPHLVHSCNLNIESLITDVNR 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,100
Number of Sequences: 5004
Number of extensions: 49455
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)