Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h19r
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109...    31   1.2  
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760     29   3.7  
07_03_1106 + 24017601-24019955                                         28   6.5  

>02_05_0973 +
           33209385-33209456,33210517-33210721,33210810-33210975,
           33211268-33211490,33211928-33212004,33212090-33212183,
           33212202-33212271,33212350-33212447,33212565-33212692,
           33212772-33212900,33213013-33213421,33213984-33214105,
           33214224-33214313,33215092-33215304,33215453-33215584,
           33216258-33216333,33216403-33216420
          Length = 773

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 553 NINHITLKSRKKQRIAADGGKSYGRN*CSGGVSTLSNEEND 675
           +++HI + +R  +R+ +DG   YG N    G S   NE+ +
Sbjct: 619 SVDHIAVHARTIKRVRSDGSILYGSNTSISGCSGCHNEDKE 659


>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
          Length = 289

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 647 TPPLHQFLPYDFPPSAAILCFLRDLSVI 564
           TPP  QF+ +D PP+AA      DL+ +
Sbjct: 174 TPPQQQFIRFDAPPAAAAAASPTDLAPV 201


>07_03_1106 + 24017601-24019955
          Length = 784

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 696 HSYPPPRVVFLITEGRDSPAASVS 625
           HS PPPR+  L++    +P++S S
Sbjct: 28  HSSPPPRIFSLLSSSHPAPSSSTS 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,159
Number of Sequences: 37544
Number of extensions: 289775
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)